BAC Information

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BAC

Clone NameMSMg01-334L24
Chromosome14 (Build37)
Map Location 70,249,693 - 70,249,965
singlet/doubletsinglet
Overlap gene1700081D17Rik
Upstream geneAdam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1, Slc25a37, D930020E02Rik, Entpd4, Loxl2, R3hcc1, Chmp7, Tnfrsf10b, Rhobtb2, LOC100043701
Downstream geneLOC668397, Egr3, Bin3, 2610301G19Rik, 9930012K11Rik, Pdlim2, Sorbs3, Ppp3cc, LOC100043115, Slc39a14, EG668450, Piwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-334L24.T7 (MSMg01no334_l24.b1)MSMg01-334L24.TJ (MSMg01no334_l24.g1)
ACCAG450168AG450169
length750789
length of high quality
(start - end)
300 (73 - 372)376 (75 - 450)
definitionCHROMAT_FILE: MSMg01no334_l24.b1 PHD_FILE: MSMg01no334_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:16 2005CHROMAT_FILE: MSMg01no334_l24.g1 PHD_FILE: MSMg01no334_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:22:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATAATTGCGGCGCTAAACGACTCCTATAGGGTGCGACCCGCAGGATTC
CCATTCTACTTCCCAAAATAATGATCCCCATGGGCGCTTTATTGCTGCTT
TATTTACTACAGCGAGGAATTCGGAACTAACGTAGTGGTCTAAGCAGATG
AAGCTGTAGTGAAATCTGGTACTGACACGCAAGTGGAATACTATTCAGCT
CTAAAGAAAAATGAAATCACAAAACTTGCAAGAAAATAGATTTGGAAAAG
ATGATATTAGGCAAGGTCATGCAAGCTCAGAATGAAAAAAGAAACCCTCA
CGTTCTCCCTCATACGGGGACTTTTTTTCCCTTCTGTGTACAGATGTGTA
TGTATTCAAAGAATGTACATAGGATCGCTGCACAACGTATAGAAAGGAGA
CCAGGAAAGGCTAAATGTTCAGTGACAAGGAAGGTATGGATGCATGTGAA
GGGTTTGACCCATGAAAGAGGATATGAAATTGTGTTTCCAGTTGCTTGCT
TGTTTGTTTTGATTCTTCCCTTTTTGGCACCTGCTGAAATAAGCGCTTGA
TAACCCCTTTGACCGAATGTGTTTGATTCACGACCCGTTTACTCATTTTC
CGTACGTTCACTCTAATTGTGCTGTAACGCTCTTTGCACCTGCCCTATTC
CGCTGTTCGTTTTTTCATTTCGACGACAGTCCTCCTACCTTATTCTTCCA
CACCACCCTCCCTCTCTTATCTCAACTTTCCCCCTTTCACTCCCCCTTGT

CCATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAACAAGACAGCCAGGACTACACAGAGAAACC
CGGTTTCAAAACCAAAAAACCAACCAACCAACCAACCAAACAAACAAAAA
AACAACAACAAAACAAAAAAAAACCAAAAAAACCCCACAAACAAACAAAC
AAAAACAAAAACAAAACCCCAAAACAAACAAACAAACAAACAAAAAAACT
AAATAAAAAAGAAAGAAAAATCTATTCCCAAAGATGTCTTCGAAACTGCC
CAAACTTTGTCACCCCAAAAGAGTGTTGTTTACGTGCAAAAAGTTAAGAG
AAACAACTAATACTCCTGCAGTGTTGATTTGGACAATTCATACTGCTCCT
CCCACTCTCTGGAAGTACAGAGACCAAGTCTAGGTGGTGGGGGTGCCCAC
CTTCCAAAGCACACCATGTGTGGTTTACCAGCTGCTCTGGACCCAACTAC
CTTTCTCCAAATTTGATCCTGGAGCTACTGAAAGCACTGGGGGAGTAGGG
GGGCGTAAAAGGGCATGCACGCCCTTGCGCATTACATTACCCTCTCGGGC
TCCGCTTCTATTCCTACTGGGAAGCCTTTCCGAGGGAGGCGACTCGGCAT
TTTATATTTTTGCCCTGTCGGGGTTTGTTTCTTGCAATGATCCCCCTGCC
CGTGTTATGGTAGTCACCGTGCTCTCCGCTTTCGAGCCTCGATTATAGCC
GCTTTTCGTTCTCCATTTTCACTTCCATATTATCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no334_l24.g1 MSMg01no334_l24.g1 CHROMAT_FILE:
MSMg01no334_l24.g1 PHD_FILE: MSMg01no334_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:22:17 2005
         (376 letters)



>mm_chr14_70249390_70250165
          Length = 776

 Score =  400 bits (207), Expect = e-116
 Identities = 262/287 (91%), Gaps = 20/287 (6%)
 Strand = Plus / Plus

                                                                       
Query: 96  aaaaccaaaaaaaccc---cacaaacaaa-caaacaaaaacaaa-aacaaaacccc-aaa 149
           ||||||||||||||||   || ||||||| ||||||||  |||| || |||||||| |||
Sbjct: 304 aaaaccaaaaaaacccaaaca-aaacaaaacaaacaaa--caaacaa-aaaacccccaaa 359

                                                                       
Query: 150 acaaacaaacaaacaaacaaaaaaactaaataaaaaagaaagaaaaatctattcccaaag 209
           |||||   ||||||||||||||    ||||   |||||||||||||||||||||||||||
Sbjct: 360 acaaa---acaaacaaacaaaa----taaa---aaaagaaagaaaaatctattcccaaag 409

                                                                       
Query: 210 atgtcttcgaaactgcccaaactttgtcaccccaaaagagtgttgtttacgtgcaaaaag 269
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 410 atgtcttcgaaactgcccaaactttgtcaccccaaaagagtgttgcacacgtgcaaaaag 469

                                                                       
Query: 270 ttaagagaaacaactaatactcctgcagtgttgatttggacaattcatactgctcctccc 329
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 470 ttaagagaaacaactaatactcctgcagtgttgatttggacaattcatactgctccttcc 529

                                                          
Query: 330 actctctggaagtacagagaccaagtctaggtggtgggggtgcccac 376
           |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 530 actctctggaaggacagagaccaagtctaggtggtgggggtgcccac 576


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 776
Length adjustment: 9
Effective length of query: 367
Effective length of database: 767
Effective search space:   281489
Effective search space used:   281489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)