BAC Information

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BAC

Clone NameMSMg01-335I19
Chromosome14 (Build37)
Map Location 66,239,834 - 66,240,174
singlet/doubletsinglet
Overlap geneGm600
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3
Downstream geneScara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335I19.T7 (MSMg01no335_i19.b1)MSMg01-335I19.TJ (MSMg01no335_i19.g1)
ACCAG450779AG450780
length729751
length of high quality
(start - end)
341 (244 - 584)531 (71 - 601)
definitionCHROMAT_FILE: MSMg01no335_i19.b1 PHD_FILE: MSMg01no335_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:21 2005CHROMAT_FILE: MSMg01no335_i19.g1 PHD_FILE: MSMg01no335_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGCTATACGACTCACTATAGGTTTCAGATCCGCGGAATTCTTCAGTTCC
TTTCCCAAGGACAACATCTGGCTTCTGTCCAGGTTAGCCAATAGCTTTAC
GTATTTTAACCTCCATTACATGGAAGCTGAAATTGTATGTTGTACCATGT
AGAACCAGAGGTGCCAAAGCTCTGGGTGATCAGGCCTCCTGCATGAGGGG
AAGTCCGCTGCTGAGCAATCGGAGCCAGTTTCCATGATGCGACAACTCAG
CANAGCTGTTGTCCAATCTCTCGAATTGTTCTTGCTGACAGAGAGAAACA
CGCATTTTTTTATTTTTCTAATCAGATTATCTTGGGAACTGGGAAGGCAT
AGTATTTCAGTGCTCAGTTCACTATGTTTACTGCTAATAAATGTAGCAAA
TTGATTTGCATGAGTTGGGATCTGGGCTGCAATGTGCCAGTTGCAGTTTT
CTGCAGTTCTTGGCATGCAAACACTTTTGATTTTGCAACCCATGCAGATC
CCAGCTAAGGGCTAAGTGTTGGACCAATTTGCTAGCCACGTTGAACCTCC
ATTGGTTAAAATCTTCATTCATAAGGACTCCACCCTCAGGGCTTAATCTC
GTCACAATAATCCCACCTCCTAAAACCATTAATTACTTCAGAGAATCTGA
TATCAAACTTATACTTTCAGCTTGAAGTCTCCAGGCTCTTTTGTATATCA
AAATAATCTTTTTAGTGTTACATGAGAAT
ATGCAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGT
CTGGCGGTTCCTCAGAAAATTGTACATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCCCTGATAAGTGGAT
ATTAGCCTCAAACCTATGATACCCAAGATATAAGATACTATTTCCCTTAA
CACCTGACATTCCAGAAAAATGTAAGATTGAATTGTTGTTCCCTATGCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_i19.b1 MSMg01no335_i19.b1 CHROMAT_FILE:
MSMg01no335_i19.b1 PHD_FILE: MSMg01no335_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:21 2005
         (341 letters)



>mm_chr14_66239634_66240374
          Length = 741

 Score =  601 bits (311), Expect = e-176
 Identities = 334/344 (97%), Gaps = 6/344 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aactcagcanagctgttgtccaatctctcgaattgttcttgctgacagagagaaacacgc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 aactcagcaaagctgttgtccaatctctcgaattgttcttgctgacagagagaaacacga 260

                                                                       
Query: 61  attttttta--tttttctaatcagattatcttgggaactgggaaggcatagtatttcagt 118
           ||||| | |  ||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attttatgaggtt---ctaatcagattatcttgggaactgggaaggcatagtatttcagt 317

                                                                       
Query: 119 gctcagttcactatgtttactgctaataaatgtagcaaattgatttgcatgagttgggat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gctcagttcactatgtttactgctaataaatgtagcaaattgatttgcatgagttgggat 377

                                                                       
Query: 179 ctgggctgcaatgtgccagt-tgcagttttctgcagttcttggcatgcaaacacttttga 237
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ctgggctgcaatgtgccagtgtgcagttttctgcagttcttggcatgcaaacacttttga 437

                                                                       
Query: 238 ttttgcaacccatgcagatcccagctaagggctaagtgttggaccaatttgctagccacg 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttttgcaacccatgcagatcccagctaagggctaagtgttggaccaatttgctagccacg 497

                                                       
Query: 298 ttgaacctccattggttaaaatcttcattcataaggactccacc 341
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ttgaacctccattggttaaaatcttcattcataaggactccacc 541


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)