BAC Information

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BAC

Clone NameMSMg01-335N17
Chromosome14 (Build37)
Map Location 87,807,507 - 87,807,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043310, LOC100043311, Diap3, EG665324
Downstream geneTdrd3, LOC100043317, LOC100043780, LOC668624, LOC668625
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-335N17.T7 (MSMg01no335_n17.b1)MSMg01-335N17.TJ (MSMg01no335_n17.g1)
ACCAG451014AG451015
length730756
length of high quality
(start - end)
541 (31 - 571)383 (196 - 578)
definitionCHROMAT_FILE: MSMg01no335_n17.b1 PHD_FILE: MSMg01no335_n17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:45 2005CHROMAT_FILE: MSMg01no335_n17.g1 PHD_FILE: MSMg01no335_n17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:23:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCTATACGACTCACTATAGTTCCGAGGATCCGCGGAATTCTCACCTGT
GGCCTACCTAATGGCTGAGAAGCACCTGAAAAAATGTTCAGCATCCTTAA
TCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTATCTCACACCA
GTCAGAACGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGTGAGG
ATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTG
TACAACCACTTTGGAAATCAGTCTGTCGCTTCCTTGGAAAATTGGACATA
GTACTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGATGT
TTCAACCAGTAAGACGGACACATGCTCCACTATGTTCATAGCAGCCTTAT
TTATAATAGCCAGAAGCTCGAAAGAGCCCAGATGCCCCTCAACAGAGGAA
TGGATACAAAAAATGTGGTACATTTACACAATGGAGTACTACTCAGCTAT
TAAAAAGAATGAATTCATGAAATTCCTAGGCAAATGGTTGGACCTGGAGG
GCATCATCCTGAGTGAGGTAACACAATCACAAAAGAACTCAAATGATATG
TACTCACTGATAAGTGGATATTAGCTCAGAAACTTAGTATACCCAAGATA
TTAGATACTGTTTGCAAAACACATGATACTTGAAGAAGAATGAAGACCAA
AGTGTGGGACCTTTTGTCCCTTCTTAGAAN
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACAGAAGATCTGGAAGAGGAGGCTTCA
CACTGTGTCAGGTATCAATGACAAACTTTGAAGAGAATAAATGAGTTGTA
AAATATTCAGAGTGTGATAATTTTGAGGAAGTTCAGACACTAGTAGAATC
AACCTTGCAAATGTCATTAGCTATGGAAGTGCCAGCAATAATTTACAAGT
TTTCTTTGAGACATTTTCTACTTCGTTTTGGAAACGACTCACCCTGTGCA
ACGGATCAGATCATGCCCTGATCAAACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACACACATGGTCT
CAGTCCTACATCACTGAAAGGATAAGTTCAGTGATCAGAAGGACTTTGGC
AACATGGCAAAGTTTGGCGCTTGAAATGCACAGTGTAAACACAGCTTTAT
CTTTCTGTAGGGAAGCAAAAGGCACCACCAGTTCCTTTTCTATACCCTCC
TTATTTTTGGGTTGTTTTTGTTTTTGCTTTGTTTTTTGGAGACAGGGTTT
CTCCATGTATCCCTGGTTGTCCTGGAACTCTCTCTGTAGACCAGGCTGGT
CTCGAACCCCTATATCTGCCCGCCCCTGCCCTCCACGTGCTGGGATCCCA
GGTGCGTGCTCCCCCCCGCTTGGCCTTTTTTTTTTTTTTCTTCAAAATTA
TTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no335_n17.g1 MSMg01no335_n17.g1 CHROMAT_FILE:
MSMg01no335_n17.g1 PHD_FILE: MSMg01no335_n17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:23:45 2005
         (383 letters)



>mm_chr14_87807307_87808089
          Length = 783

 Score =  702 bits (363), Expect = 0.0
 Identities = 374/381 (98%), Gaps = 6/381 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaatcaaccttgcaaatgtcattagctatggaagtgccagcaataatttacaagttttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaatcaaccttgcaaatgtcattagctatggaagtgccagcaataatttacaagttttct 260

                                                                       
Query: 61  ttgagacattttctacttcgttttggaaacgactcaccctgtgcaacggatcagatcatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgagacattttctacttcgttttggaaacgactcaccctgtgcaacggatcagatcatg 320

                                                                       
Query: 121 ccctgatcaaacacacacacacacacacacacacacacacacacacacacacacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccctgatcaaacacacacacacacacacacacacacacacacacacacacacacacacac 380

                                                                       
Query: 181 acacacacacacacacacatggtctcagtcctacatcactgaaaggataagttcagtgat 240
           |||||||||||||      |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acacacacacaca------tggtctcagtcctacatcactgaaaggataagttcagtgat 434

                                                                       
Query: 241 cagaaggactttggcaacatggcaaagtttggcgcttgaaatgcacagtgtaaacacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cagaaggactttggcaacatggcaaagtttggcgcttgaaatgcacagtgtaaacacagc 494

                                                                       
Query: 301 tttatctttctgtagggaagcaaaaggcaccaccagttccttttctataccctccttatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tttatctttctgtagggaagcaaaaggcaccaccagttccttttctataccctccttatt 554

                                
Query: 361 tttgggttgtttttgtttttg 381
           ||||| |||||||||||||||
Sbjct: 555 tttggtttgtttttgtttttg 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 110
Number of extensions: 38
Number of successful extensions: 38
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 383
Length of database: 783
Length adjustment: 9
Effective length of query: 374
Effective length of database: 774
Effective search space:   289476
Effective search space used:   289476
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)