BAC Information

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BAC

Clone NameMSMg01-336D23
Chromosome14 (Build37)
Map Location 90,603,893 - 90,604,273
singlet/doubletsinglet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336, EG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336D23.T7 (MSMg01no336_d23.b1)MSMg01-336D23.TJ (MSMg01no336_d23.g1)
ACCAG451313AG451314
length7331,034
length of high quality
(start - end)		481 (41 - 521)---
definitionCHROMAT_FILE: MSMg01no336_d23.b1 PHD_FILE: MSMg01no336_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:16 2005CHROMAT_FILE: MSMg01no336_d23.g1 PHD_FILE: MSMg01no336_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:24:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTCCCTCTACATCTTTGCCAAATGTTACCTTCATTTTTACTTGCCTTTT
CAAATTTCTTTTGAGAATTTCACAGATCAATACAATATGTACGCAATTCT
TTTCCTTTCTTTAATATCTCTAATGTCCTCCTTCCTCTCAGAATCATGTT
ATTTTATTCCTAAACTATTATTGCATACATATATACATATTAATTCATAG
ATATGACCACCTGACTCCCTGTTTTGCTTGTAAGTATATGTGGTTAGGTT
TGACCACTTGAGACTGGATGTGCAATTGTGAAGATTATGTTTGGAAAGAG
ATTTTACCCTTCTTACAGAGGCCATTCCTTTGTAGCTTTTCAGCTATGAG
AGGCCGCTATGAGACCACCCCCCACCCCTACTGGCATGCCCACTGGTATT
GTCTTTACTTATATCTTATTTAGGCAATCATGCTGATAAGATTTAATGGG
TGCAGATTCCCTGTTATAATTAGAAGGTACTATGGTTCTCTGCCTCTTAA
TATCATCTCAGCTCCTATTCTATAATGTTTACTGAACCTTANGCATGGGA
GTTGTGCTGTAAATGATCATTTGGGGCTAGTAAGCCAGGGCCGAAGTTCT
CTGNTTTAATAAGTTTGGTTTCCCTAAAACCCCGGCCGATGAAAAAAAAA
CATGGTAAAAACATTCCTCCCCGAAGGGCCCCG

CCTCGTATTTTCTATGCACGCATAAGTCCCTCACTTTCTTGGGGTGTTCA
TTGATGGGCTCCCGCGCTACTCCGTCTGTGTCCCCCGGTTTGGATCGTGT
TGCCGGGGCGGGTCCTTAGCTTACAGATCTATAGATACACAACGACTTTG
TCGCACCCCGCAAGCAGTAGGCCGTATAAGTAAATAGCGGAACCCCTCGT
TTTTTTTAGAATATATAGTAGAAAGGAGAGATTTTAGACACGAGACATGT
CATCCTCACTGCCCCAGACGAAGTGGTCCACACCATCAGTCGACCAGACC
CTGATCTCCGGTCGCTCCGTCACCTCCAAGCACTCTCGTTCTGTTATGTC
CACCAGCCAATAATTTTATTTCCGCTGGCCGGTGTTTGCTATCCCACAGA
CACCCCCACAATTATGAGTGTAGCGCATCCTTTGTTCCCGCTGTGCGGTT
ATTACATTTTTAAACGAGGCGTACCGCCACAGTGAGCGGATTCGCGTGAA
AATCTCTCGCCCGCCCGGCACCCTGAAGGGGAGGATGAAAAATACATCTG
TTGTTTAGGGCGTTTGGACAGCACCGCGAAAGTAATATATTTTTTTTCAC
GCCCCCACGCGGTTTATAGGTATTATACCTCCCGTGGCCTAGTATATTGG
TCGGGCGATCATATTAGCCGTGCCGGCAGATAGAGACGACAAAATACCTC
TTCACCGTCATTCGTTTTGTTCATCTCTACTTATTATATGTCCTACGAGC
TATTCGCAGCGTCCATGCGCAATATTTTATCCTTAATTTATGCGTGTAAT
GCCCGGAGGGGCGAATATTTTATATTTATTCTTTCTTCACTCAGTAATAA
TTAATATAATCGGCCAACTACCTCTGCACGTGTATCTCACCACAACATAA
AAAATTATTGAGCACATGTCGCGCTACGCTACATATTTTATACACACTCC
CCCAACCCCTCTCCTAATTCTATTTATATTGTCGCCTCCGCCCCTCTATT
ATCTTATGTCTTGCTGCGCCATCCGCCTGCCATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_d23.b1 MSMg01no336_d23.b1 CHROMAT_FILE:
MSMg01no336_d23.b1 PHD_FILE: MSMg01no336_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:16 2005
         (481 letters)



>mm_chr14_90603893_90604773
          Length = 881

 Score =  737 bits (381), Expect = 0.0
 Identities = 381/381 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctttccctctacatctttgccaaatgttaccttcatttttacttgccttttcaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaattctttccctctacatctttgccaaatgttaccttcatttttacttgccttttcaa 322

                                                                       
Query: 64  atttcttttgagaatttcacagatcaatacaatatgtacgcaattcttttcctttcttta 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttcttttgagaatttcacagatcaatacaatatgtacgcaattcttttcctttcttta 262

                                                                       
Query: 124 atatctctaatgtcctccttcctctcagaatcatgttattttattcctaaactattattg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atatctctaatgtcctccttcctctcagaatcatgttattttattcctaaactattattg 202

                                                                       
Query: 184 catacatatatacatattaattcatagatatgaccacctgactccctgttttgcttgtaa 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catacatatatacatattaattcatagatatgaccacctgactccctgttttgcttgtaa 142

                                                                       
Query: 244 gtatatgtggttaggtttgaccacttgagactggatgtgcaattgtgaagattatgtttg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gtatatgtggttaggtttgaccacttgagactggatgtgcaattgtgaagattatgtttg 82

                                                                       
Query: 304 gaaagagattttacccttcttacagaggccattcctttgtagcttttcagctatgagagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gaaagagattttacccttcttacagaggccattcctttgtagcttttcagctatgagagg 22

                                
Query: 364 ccgctatgagaccacccccca 384
           |||||||||||||||||||||
Sbjct: 21  ccgctatgagaccacccccca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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