Query= MSMg01no336_k16.b1 MSMg01no336_k16.b1 CHROMAT_FILE:
MSMg01no336_k16.b1 PHD_FILE: MSMg01no336_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:47 2005
(562 letters)
>mm_chr14_38282721_38283684
Length = 964
Score = 984 bits (509), Expect = 0.0
Identities = 545/557 (97%), Gaps = 4/557 (0%)
Strand = Plus / Plus
Query: 9 gaattctatttgtctc-cagcacttagtataaatagtttttcttgtcagtctaatacaca 67
|||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 209 gaattctatttgtcgcacagcactcagtataaatagtttttcttgtcagtctaatacaca 268
Query: 68 tatagtgtctttcatttaggttttagtggcatcgcataggtctcatatgctctatttgta 127
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 269 tatagtgtctttcatttaggttttagtggcattgcataggtctcatatgctctatttgta 328
Query: 128 ctttgttcttcctttataattcttgttgtatggaagttttaagtcttataagttatcttt 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctttgttcttcctttataattcttgttgtatggaagttttaagtcttataagttatcttt 388
Query: 188 aaatcacagtgttagttttctacatgtctatgctattggtgaggtttt-ccactgaggtt 246
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 389 aaatcacagtgttagttttctacatgtctatgctattggtgaggtttttccactgaggtt 448
Query: 247 ttttt-atttgactcattgggcttcttatttctgcaaaattccagtttgattatttaaag 305
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ttttttatttgact-attgggcttcttatttctgcaaaattccagtttgattatttaaag 507
Query: 306 tatttctacatgcttcttagattgcacctttaaatattatgctgactcctttatttcatc 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tatttctacatgcttcttagattgcacctttaaatattatgctgactcctttatttcatc 567
Query: 366 tagctatttatatgtgttcccttttaattcattcaggagtttgtgtcctgttttatttca 425
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 tggctatttatatgtgttcccttttaattcattcaggagtttgtgtcctgttttatttca 627
Query: 426 ttaaacatgtttacaattatttttgaaatactggtggggaatttcaaaagtctattttaa 485
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 628 ttaaacatgtttacaattatttttgaaatactggtgtggaatttcaaaagtctattttaa 687
Query: 486 cgagaattcattactatatactttgtaatttctggaataaccctaccaccttaatttccg 545
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 688 ctagaattcattactatatactttgtaatttctggaataaccccaccaccttaatttctg 747
Query: 546 tgtttattttgtttctt 562
|||||||||||||||||
Sbjct: 748 tgtttattttgtttctt 764
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 964
Length adjustment: 10
Effective length of query: 552
Effective length of database: 954
Effective search space: 526608
Effective search space used: 526608
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_k16.g1 MSMg01no336_k16.g1 CHROMAT_FILE:
MSMg01no336_k16.g1 PHD_FILE: MSMg01no336_k16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:24:47 2005
(573 letters)
>mm_chr14_38458933_38459905
Length = 973
Score = 696 bits (360), Expect = 0.0
Identities = 404/420 (96%), Gaps = 3/420 (0%)
Strand = Plus / Minus
Query: 157 atggtttgctatctctcctcagcctcactgcagctctggggtgaaatatcccacccctga 216
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 973 atggtttgctatctctcctcagtctcactgcagctctggggtgaaatatcccacccctga 914
Query: 217 ctctaatgtagaatcctgtctcccttatgtaagtcctgtctcctatttcctgcctaataa 276
||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct: 913 ctctaatctagaatcctgtctcccttatgtaagtcatatctcctatttcctgcctaataa 854
Query: 277 tcttttgcctaagataataaaccaacaga---atttttagtgacaggtgatgctttcatg 333
||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||
Sbjct: 853 tcttttgcctaagctaataaaccaacagattgttttttattgacaggtgatgctttcatg 794
Query: 334 cagtacaccagagattctctacagctctttcaatctggtacaagcacacgcgttattgtt 393
||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 793 cagtataccagagattctctacagctctgtcaatctggtacaagcacacgcgatattgtt 734
Query: 394 gaccctagttgtcaaaacaatcatgtagaatcaagtatgaggatcctgttctaaatgtct 453
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 733 gaccctagttgtcaaaacaatcatgtagaatcaggtatgaggatcctgttctaaatgtct 674
Query: 454 taagtaatcccccaatgttaaacaacttgctctgataccagggctggaattcaaatgaag 513
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 673 taagtaatcccccagtgttaaacagcttgctctgataccagggctggaattcaaatgaag 614
Query: 514 aaatagttttcactttatttattgcatattcaccttcactctgcttcctctaccacttac 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 aaatagttttcactttatttattgcatattcaccttcactctgcttcctctaccacttac 554
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
