Query= MSMg01no336_n14.b1 MSMg01no336_n14.b1 CHROMAT_FILE:
MSMg01no336_n14.b1 PHD_FILE: MSMg01no336_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:02 2005
(495 letters)
>mm_chr14_121789784_121790678
Length = 895
Score = 774 bits (400), Expect = 0.0
Identities = 473/516 (91%), Gaps = 35/516 (6%)
Strand = Plus / Plus
Query: 1 ccaagaacccc--ttggaccagcatttgggaaccatgagttttaaggattaaacaatcaa 58
||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 194 ccaagaaccccccttggaccagcatttgggaaccatgagttttaaggattagacaatcaa 253
Query: 59 atgacttccctggtgacctaactccctggaaaacagggtagacatcaaggccacagcctg 118
|||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 254 atgacttccctggtgaccta----cctggt-----gggtagacatcaaggccacagcctg 304
Query: 119 ctgagttaagatgccatagtgtggggctggagagatggctcagaggttaagatcactgac 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 305 ctgagttaagatgccatagtgtggggctggagagatggctcagaggttaagagcactgac 364
Query: 179 tgttcttccgaaggtcctgagttcaaatcccaggttatggtggctcataaccatccataa 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 365 tgttcttccgaaggtcctgagttcaaatcccaggttatggtggctcataaccattcataa 424
Query: 239 tgacatctgacaccctctactggtgtgtctgaagacagcttcagtgtacttacatataaa 298
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 425 tgacatctgacaccctctactggtgtgtttgaagacagcttcagtgtacttacatataaa 484
Query: 299 taataaatatttcaa--------ctaactaaataaataaat-----gttt------aaaa 339
||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct: 485 taataaatatttcaaataactaactaactaaataaataaataaatggtttttttttaaaa 544
Query: 340 aaaaaagatgccacagtgtaaattttatgcataggcagggctactgaggcccttgtccat 399
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 a-----gatgccacagtgtaaattttatgcataggcagggctactgaggcccttgtccat 599
Query: 400 ggaggaaatcctggtcctcatacagtgggaagaacaagaaacctgggatatttagaggga 459
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 600 ggaggaaatcctggtcctcatacagtgggaagaacaaggaacctgggatatttagaaaga 659
Query: 460 taggtgattgtggtcgggtgtgtctctggcttcccc 495
||||||||||||||||||||||||||||||||||||
Sbjct: 660 taggtgattgtggtcgggtgtgtctctggcttcccc 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no336_n14.g1 MSMg01no336_n14.g1 CHROMAT_FILE:
MSMg01no336_n14.g1 PHD_FILE: MSMg01no336_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:02 2005
(387 letters)
>mm_chr14_121955087_121955875
Length = 789
Score = 694 bits (359), Expect = 0.0
Identities = 381/389 (97%), Gaps = 2/389 (0%)
Strand = Plus / Minus
Query: 1 atctgcagccgtcatcatctcatttgatctgacaaccagctaatagtaatttagggccta 60
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 495 atctgcagccgtcatcatctcatttgatttgacaaccagttaatagtaatttagggccta 436
Query: 61 acatttgatccttattttttaaataaacc--tttttttttttagcaaagaatgtaaaagt 118
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 435 acatttgatccttattttttaaataaacctttttttttttttagcaaagaatgtaaaagt 376
Query: 119 ggtttaaaagcaaacaaaaattaaaatggagaaatccagactaaggcagggcaagggtgg 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ggtttaaaagcaaacaaaaattaaaatggagaaatccagactaaggcagggcaagggtgg 316
Query: 179 tagaccctgagcaagaaaactaccagggtttcctcaaagattttcttagtgacatgaaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tagaccctgagcaagaaaactaccagggtttcctcaaagattttcttagtgacatgaaaa 256
Query: 239 agaattttgaggattctagattaatcaagtaagaggcaaggctagtgcagtgactcactt 298
|||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 agaaataagaggattctagattaatcaagtaagaggcaaggctagtgcagtgactcactt 196
Query: 299 aggaagtgaacacgggaggatcaggggttcaaagtcacactgggctgcatgagatcctgt 358
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aggaagtgaacatgggaggatcaggggttcaaagtcacactgggctgcatgagatcctgt 136
Query: 359 tgaaagcaaggtgggtggggggaggggag 387
|||||||||||||||||||||||||||||
Sbjct: 135 tgaaagcaaggtgggtggggggaggggag 107
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 789
Length adjustment: 9
Effective length of query: 378
Effective length of database: 780
Effective search space: 294840
Effective search space used: 294840
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
