BAC Information

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BAC

Clone NameMSMg01-336O22
Chromosome14 (Build37)
Map Location 61,455,450 - 61,455,911
singlet/doubletsinglet
Overlap geneMipep
Upstream geneAtp8a2, LOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13, C1qtnf9
Downstream geneLOC100043586, Tnfrsf19, Sacs, Sgcg, Arl11, EG432864, Ebpl, Kpna3, LOC100042933, EG432865, 6330409N04Rik, LOC100042941, Trim13, Kcnrg, LOC668253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-336O22.T7 (MSMg01no336_o22.b1)MSMg01-336O22.TJ (MSMg01no336_o22.g1)
ACCAG451832AG451833
length748761
length of high quality
(start - end)		489 (41 - 529)465 (69 - 533)
definitionCHROMAT_FILE: MSMg01no336_o22.b1 PHD_FILE: MSMg01no336_o22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:08 2005CHROMAT_FILE: MSMg01no336_o22.g1 PHD_FILE: MSMg01no336_o22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:25:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGACCTTCTCCCAGCTTTCGTGTTGCCAGAAGGTGTTCTGCATAATACCA
GAGGAGAAAAGTAAGAAACCCTGTGAGATACCATAAAGTAACCACTTTCT
TATTGAACTTAAGGCCTGTGTTGTGAGACAGAACCCATGCCTGGCACCAT
TATCAGGGCCATGAACCTGAAGCTAGATAGGTCATAGGCCCTAGAGAAGA
ACTTGCTACCATTATTCTGCTAAATAGACATAGTAGTAAAACAACTCCTA
GCAACTTATGGCTATGCTCATAAGCCAGTTCACCTTCCAAACCCCATCAA
GTTTCTTTGTGAAGTAGATGGCAGTTAACGCAGAGACCCATAACTTGTCA
GCATACAGAATTAAGAGACTAGGGAGTATTAGCCTTACGTGGGACATCGA
TAGCTTCCCCTGTCTCTCAAGGCTCTGGGATCATCTTGGAAGAGGGGGTA
GAAAGAGCCAGCGTTGATGGATGACTACGAGGAAGCACTGTGAGTTCAAG
GGCAGTCTGGAGTGCTTATTGAGATGCAGCCGGAAAATAAAACTACCACT
GGGCTGGAGACGTAACTCTGGGAAAAGTATTTACTTACACATATGAAGCC
CTTACCTCATCCCCCCCCTGGGAAAAAGCCGAGGGAATTTCTATCTTTTC
CCACTCTAACAATCTCTGAAAAATGGGGAGGTTTCCCTGGAGATTGGG

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTGTATTTCTCTGTACAGCAGCATATCTGTGCC
ATATACCAATGTCAGGATTGAGTCTTCAGATTCATGACAAGGGCATAGCT
CACCATTTATCGGGTTTCTTAAAAGTCTTGGAACAAACTTTTGATGTCTT
CTTTCTAAGACCTTGATCCACGTTTGCCAGACTCATTTCTAAAAGCTTCA
CCCTTCATACTGCTGTAAATACCCTCAGTGACCTTGGGCAAGCCGTTGGT
TCCAGGAACCTGCCTGTAGACTTGGACCCGCTCTGCATCATTCCTTCTGC
TGTGAGTGCTTTGTTCTCTTTCTAGTCCGCATAGCTTTTGTTTCTTTTTC
TTGTCTCATTCCCCCCTCTGAGTAGAAGCTGCGTATGAATGTGTCTCGCC
TTGATCCTGATTGATGCTTTTGTTTGCTTATTTTTGTTCAGCCTGGTTTT
TAGAGCAATGTTTCTACTGTTTTATCATGAAGGAAGATGCTTATTATGGG
TTTGGTAGAGATGCCAGGGAATGCAAATTCCCTTCAAATTTTAGCTTACA
GAGGTTTGCTTATCATTATTATTTTTTAAATCATTAACCGATGCCATGTT
CTACCAAATTGGTTTTCCCCACACCCCTGGAAAAATGGAAAAATGGGAAA
ACGGTTAAAAATAACATTAAAAAACCCTTTCTTTCTCTAAAAAAATACAT
TTTCTTCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no336_o22.g1 MSMg01no336_o22.g1 CHROMAT_FILE:
MSMg01no336_o22.g1 PHD_FILE: MSMg01no336_o22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:25:08 2005
         (465 letters)



>mm_chr14_61455250_61456111
          Length = 862

 Score =  820 bits (424), Expect = 0.0
 Identities = 454/466 (97%), Gaps = 5/466 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtatttctctgtacagcagcatatctgtgccatataccaatgtcaggattgagtcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtatttctctgtacagcagcatatctgtgccatataccaatgtcaggattgagtcttca 260

                                                                       
Query: 61  gattcatgacaagggcatagctcaccatttatcgggtttcttaaaagtcttggaacaaac 120
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gattcatgacaagggcatagttcaccatttattgggtttcttaaaagtcttggaacaaac 320

                                                                       
Query: 121 ttttgatgtcttctttctaagaccttgatccacgtttgccagactcatttctaaaagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttgatgtcttctttctaagaccttgatccacgtttgccagactcatttctaaaagctt 380

                                                                       
Query: 181 cacccttcatactgctgtaaataccctcagtgaccttgggcaagccgttggttccaggaa 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 cacccttcatactgctgtaaataccctcagtgaccttgggcaagcccttggttccaggaa 440

                                                                       
Query: 241 cctgcctgtagacttggacccgc-tctgcatcattccttctgctgtgagtgctttgttct 299
           ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 441 cctgcctgtagacttggacccgcgtctgcatcattccttctgttgtgagtgctttgttct 500

                                                                       
Query: 300 ctttctagtccgcatagcttttgtttctttttcttgtctcattcccccctctgagtagaa 359
           ||||| ||||||||||||||||    ||||||||||||||||||||||||||||||||||
Sbjct: 501 ctttccagtccgcatagctttt----ctttttcttgtctcattcccccctctgagtagaa 556

                                                                       
Query: 360 gctgcgtatgaatgtgtctcgccttgatcctgattgatgcttttgtttgcttatttttgt 419
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 557 gctgcgtatgaatgtgtctcgccttgatcctgattgatgcttttgtttgcttgtttttgt 616

                                                         
Query: 420 tcagcctggtttttagagcaatgtttctactgttttatcatgaagg 465
           ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 617 tcagcctggttttaagagcaatgtttctactgttttatcatgaagg 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 862
Length adjustment: 10
Effective length of query: 455
Effective length of database: 852
Effective search space:   387660
Effective search space used:   387660
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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