BAC Information

Click to search

BAC

Clone NameMSMg01-337M06
Chromosome14 (Build37)
Map Location 87,317,684 - 87,318,156
singlet/doubletsinglet
Overlap geneDiap3
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
Downstream geneEG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337M06.T7 (MSMg01no337_m06.b1)MSMg01-337M06.TJ (MSMg01no337_m06.g1)
ACCAG452460AG452461
length752757
length of high quality
(start - end)
567 (70 - 636)473 (76 - 548)
definitionCHROMAT_FILE: MSMg01no337_m06.b1 PHD_FILE: MSMg01no337_m06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:14 2005CHROMAT_FILE: MSMg01no337_m06.g1 PHD_FILE: MSMg01no337_m06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAAGAAGGTCCCAGAAGATGAAAAGATCTCCCATGCTCATGGACT
GACAGGATTAATATAGTAAAAATGGTCATCTTGCCAAAAGCAATCTACAG
ATTCAATTCAATCCCTAGCAAAATCCCAACTCAATGCTTCATATATTTAG
AAAGAGCAATGTGCAAATTTGTTGGAATAACAACAACAACAACAACAACA
ACAAGAACAAAAAACCCAGAATAGCAATAAACTATTCTCAATAATACAAG
AACTTCTGGTGGAATTACAATCCCTGACCCCAAGCTATACTACAGAGCAA
TTGTGATAAAAACTTCATGGTATTGGTACAGTGACAGACAGGTAGATTAA
TGGAATAGAATTGAAGAGCCAGAAATGAACACACACACCTATGGTCACCT
GATCTTTGAGAAAGGAGATAAAAGCATTCAGTGGAAAAAAGACAGCATTT
TCAACAAGTGGTGCTGGCTCAACTGGCAGTTAGCATGTACAATAATGCAA
ATTAATCCATTTTTATCTCCTTGTACAAAGCTCAAGACCAAGTGGATCAA
GGACCTCCACACAAAACGAGATACATTGAAACTTATAGAGGAGAAAGTTG
GGAAGAGCCTTTGACATATGGGCACAGGGGAAAAATTGCTGAACAGAACA
CCAATGGCTTTCTGTTGAAGATCAAAATTTGACAAACGGGAACTCCCAAA
AN
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCATTATTCCACCTGAGCAGCTCAAA
GCCTTTTCTTCAAAATCTCTGATGGAAATATTTTAGATTTAATTACTGTT
ACAGGAGCTAAATACGTAGTGCTCAATTGTCTTCCTGCCTGAATTATTAT
GAGAGAAGGAAATAATTTTGTTCCTAATTCATTTCTTACTGCATCTTAAA
TGCATCAAAGAGAATTTTGCTTTGAGCCGAGATAGTCTGACCTGTGTATA
TTACTTTCAGGTGATGCAAGAGAGGTATAAGGTGAAGAATCTTGAAGAAC
AAGACATGTTAGTCTACTTCTCAGTTGTTACACTCCTTAAATGGGCTTTT
AGCAAATATCAGAAGAAAACAGTTATCTAGCCAGAGGATAATGTTATGTG
CCATTGATTATAGATTGTTATATGAGAGTAATATAAACAAAAGGTAGGCT
TGAGAGCCCTCTAAGTGGGTCAGAAATGACTCTCCATCCTCAGTATGGCA
GAGAGTAACCCTTTCTACAATTGAAGCCAGGGTTAGGTCTTTATGTGCTA
TGGTGACAATGCTACTGCCTGATGGTCACAAATGTTTTTTCTGAGCTAAG
TTGATTGGACTCCTCTGCCTATTTTTTTTGGGATTATCCACGAACTGTTT
GGGCCCCCCATAAGTTTATGGGAAAGGAATCCCCTCCGGATTTTTTCCAT
TTATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_m06.g1 MSMg01no337_m06.g1 CHROMAT_FILE:
MSMg01no337_m06.g1 PHD_FILE: MSMg01no337_m06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:14 2005
         (473 letters)



>mm_chr14_87317484_87318356
          Length = 873

 Score =  915 bits (473), Expect = 0.0
 Identities = 473/473 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattattccacctgagcagctcaaagccttttcttcaaaatctctgatggaaatatttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cattattccacctgagcagctcaaagccttttcttcaaaatctctgatggaaatatttta 614

                                                                       
Query: 61  gatttaattactgttacaggagctaaatacgtagtgctcaattgtcttcctgcctgaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gatttaattactgttacaggagctaaatacgtagtgctcaattgtcttcctgcctgaatt 554

                                                                       
Query: 121 attatgagagaaggaaataattttgttcctaattcatttcttactgcatcttaaatgcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 attatgagagaaggaaataattttgttcctaattcatttcttactgcatcttaaatgcat 494

                                                                       
Query: 181 caaagagaattttgctttgagccgagatagtctgacctgtgtatattactttcaggtgat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 caaagagaattttgctttgagccgagatagtctgacctgtgtatattactttcaggtgat 434

                                                                       
Query: 241 gcaagagaggtataaggtgaagaatcttgaagaacaagacatgttagtctacttctcagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gcaagagaggtataaggtgaagaatcttgaagaacaagacatgttagtctacttctcagt 374

                                                                       
Query: 301 tgttacactccttaaatgggcttttagcaaatatcagaagaaaacagttatctagccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgttacactccttaaatgggcttttagcaaatatcagaagaaaacagttatctagccaga 314

                                                                       
Query: 361 ggataatgttatgtgccattgattatagattgttatatgagagtaatataaacaaaaggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ggataatgttatgtgccattgattatagattgttatatgagagtaatataaacaaaaggt 254

                                                                
Query: 421 aggcttgagagccctctaagtgggtcagaaatgactctccatcctcagtatgg 473
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 aggcttgagagccctctaagtgggtcagaaatgactctccatcctcagtatgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 473
Length of database: 873
Length adjustment: 10
Effective length of query: 463
Effective length of database: 863
Effective search space:   399569
Effective search space used:   399569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)