BAC Information

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BAC

Clone NameMSMg01-337O24
Chromosome14 (Build37)
Map Location 92,549,042 - 92,549,450
singlet/doubletsinglet
Overlap genenone
Upstream geneEG639558, EG665377
Downstream geneLOC638252, Pcdh9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-337O24.T7 (MSMg01no337_o24.b1)MSMg01-337O24.TJ (MSMg01no337_o24.g1)
ACCAG452591AG452592
length779784
length of high quality
(start - end)		459 (45 - 503)409 (72 - 480)
definitionCHROMAT_FILE: MSMg01no337_o24.b1 PHD_FILE: MSMg01no337_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:27 2005CHROMAT_FILE: MSMg01no337_o24.g1 PHD_FILE: MSMg01no337_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTGATGAAGTTCTTAGGTACAAGTCATTATTCTAGACATGACAACT
ATATCATCTAGTCTTATGACAACATGACCCAAAATTAGAGTTATTGGAAA
GCAGGAAACTTTAATTCAGAAAACACCTCCATAATACCTATCTGTAAGGC
ATTTTAATTACTGATAGATGTGGGAGGGCCCAGCCCATTACGGGCGGTTC
CATCCCTGGGCTAGCAGTCCTGCATTCTATAAGTAAGCAGGCTCAGTAAT
CCTTGTGGAATAAGAGAGTAAGTAGTATTTCTCCATATCATTTTTATGAG
TTCCTTTTCTATGTTCCTGTCTTGTTTCAGTTCCTGTCCTGACTTCTTCT
AATGAAAAGCAGCAATAGGAAAGTGTAAGCCAAATAAACCCTTGCCTCCC
CAACTTGCCTTTTTGGTCATGGTGTTTCATTCCAGCAATAAACACCCCAG
CTAAGACAGTATCTGCATCTAAAATTACATTCCACAGTTTAATAGGCTGT
ATAGCATCCCTGTTTACACCATTATTCCCCAAAGCAGACTGTGATACTTC
AAATGGCCACTATCCAAAGGAAGCCCCCCTTTACTTGACTAGCTTTAAAT
TTATCTGTTTATCTGAGGGGTGGAATTTTTTCCTCCAAACCAAGGGGGGG
TGGGAGGAGTTTTTTAGTCAAAAAAAAATGGTGGGTCCCTAAAAAAATTT
AAAAAAAATTGGGGGGTTGGTCCCCCGGT

ATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGTATTAATTGCCATCTACTGTACGAAGT
GATTTCTCTGACTAGGGGTGATCACAGTCCTGAAATATTGATGCAGCAAT
GTGTGATTAGTGGGATTAGACACGATGTAAGAGGAGAGGGAAAAAATAAC
CTACATATATACAAGGTGAGTTGAATTCACTGAATGCTTTACTCTCAGTA
AGGCTGAGAAACAATTTTTGTGAACAAATGCTGACATAAAATTCATAGAT
TTAACTCCCCTAAGCTCACACATCACATTTTGCAAAAGAAATATATTATA
CAGTTTAATATAATTTTAATATTATATTTAAACTTATCAAATATTTTAAT
GATTTTATGGAGAAAGTATGAAGTTAAAGCTAGCAGAATCACTGTACTTC
AATATAGAAAATGATAAGACAATTCTGTCAGGTATATATTGTTAAGAGAA
ATTATTCTTTTTTAAGATTTTTATTAAATATTAAAAATGCTAATTTTAGG
TGGATGGAAATTTCACCTGGGTGGGGATTTATGCACCCCTTGATTCCTTT
AAAAAAACTTTAAAAACCCTTTTGTTTTTTAAAAAGGTTTTGGAAAACCT
TTTAAGAAAAAAACCCCTTTTTTTTAATACCCGGGGTTAAATCTTATAAA
AAATATCCCTTTCCCTGCCCGGGGGAAATTACTTTTTCCCTTGAATTTTC
CTACCCGGGGGCCCAAAAAGAAAAATATATTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no337_o24.g1 MSMg01no337_o24.g1 CHROMAT_FILE:
MSMg01no337_o24.g1 PHD_FILE: MSMg01no337_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:27 2005
         (409 letters)



>mm_chr14_92548984_92549792
          Length = 809

 Score =  791 bits (409), Expect = 0.0
 Identities = 409/409 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtattaattgccatctactgtacgaagtgatttctctgactaggggtgatcacagtcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 tgtattaattgccatctactgtacgaagtgatttctctgactaggggtgatcacagtcct 408

                                                                       
Query: 61  gaaatattgatgcagcaatgtgtgattagtgggattagacacgatgtaagaggagaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaaatattgatgcagcaatgtgtgattagtgggattagacacgatgtaagaggagaggga 348

                                                                       
Query: 121 aaaaataacctacatatatacaaggtgagttgaattcactgaatgctttactctcagtaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 aaaaataacctacatatatacaaggtgagttgaattcactgaatgctttactctcagtaa 288

                                                                       
Query: 181 ggctgagaaacaatttttgtgaacaaatgctgacataaaattcatagatttaactcccct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 ggctgagaaacaatttttgtgaacaaatgctgacataaaattcatagatttaactcccct 228

                                                                       
Query: 241 aagctcacacatcacattttgcaaaagaaatatattatacagtttaatataattttaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 227 aagctcacacatcacattttgcaaaagaaatatattatacagtttaatataattttaata 168

                                                                       
Query: 301 ttatatttaaacttatcaaatattttaatgattttatggagaaagtatgaagttaaagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 ttatatttaaacttatcaaatattttaatgattttatggagaaagtatgaagttaaagct 108

                                                            
Query: 361 agcagaatcactgtacttcaatatagaaaatgataagacaattctgtca 409
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 agcagaatcactgtacttcaatatagaaaatgataagacaattctgtca 59


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space:   320000
Effective search space used:   320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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