Query= MSMg01no338_a22.b1 MSMg01no338_a22.b1 CHROMAT_FILE:
MSMg01no338_a22.b1 PHD_FILE: MSMg01no338_a22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:36 2005
(465 letters)
>mm_chr14_58281936_58282801
Length = 866
Score = 820 bits (424), Expect = 0.0
Identities = 455/468 (97%), Gaps = 6/468 (1%)
Strand = Plus / Plus
Query: 4 ggaattcataatatataccccaaatctagcactcaacagaatactagtactgtttttcat 63
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataatatagaacccaaatctagcactcaacagaatactagtactgtttttcat 263
Query: 64 gcccatcaggccgatgatgaacatcatcaattaacctatcaatttcaatactagagcact 123
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 264 gcccatcaggccgatgatgaacaccatcaattaacctatcaatttcaatactagagcact 323
Query: 124 gttgagttctttgaatttaattaaaaacattacccctatttcctaggaaatcaggtattt 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gttgagttcttggaatttaattaaaaacattacccctatttcctaggaaatcaggtattt 383
Query: 184 tcgggggtgctgtatttggggattttagtaaacttttattaaacctaagattttactgca 243
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 384 tcgggggtgctgtatttggggattttcgtaaacttttattaaacctaagattttactgca 443
Query: 244 tgtttttt-aaaagatttatttatgtgttttctctgcatggcccgtggaggtcatcggat 302
|||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 444 tgtttttttaaaagatttatttatgtgttttatctgcatggcccgtggaggtcatcggat 503
Query: 303 accctgaaactggagtcaaggacagttgta-----ccatgggttctgagcagggtcctct 357
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 504 accctgaaactggagtcaaggacagttgtaaatcaccatgggttctgagcagggtcctct 563
Query: 358 gctaaagcaacaagtgatcttaatccctgagctaccatctctctaggccctcttctcact 417
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 564 gctaaagcaacaagtgatcttaatccctgagctgccatctctctaggccctcttctcact 623
Query: 418 ttctaaaagccaaagcatcttatattgtatgtgaagacaaaacttaat 465
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ttctaaaagccaaagcatcttatattgtatgtgaagacaaaacttaat 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 866
Length adjustment: 10
Effective length of query: 455
Effective length of database: 856
Effective search space: 389480
Effective search space used: 389480
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_a22.g1 MSMg01no338_a22.g1 CHROMAT_FILE:
MSMg01no338_a22.g1 PHD_FILE: MSMg01no338_a22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:36 2005
(597 letters)
>mm_chr14_58424105_58425099
Length = 995
Score = 961 bits (497), Expect = 0.0
Identities = 559/597 (93%), Gaps = 29/597 (4%)
Strand = Plus / Minus
Query: 1 agagacttcgttttactgttcggtttgccaaagatgatgttaattttagacatgaagttt 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 915 agagacttcgttttactgttcagtttgccaaagatgatgttaattttagacatgaagttt 856
Query: 61 ggtttggactgaagaaaggacagaagaggtagagagtagctagctccaggcagccctttt 120
|| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 855 gggatggactgaagaaaggacagaagaggtagggagtagctagctccaggcagccctttt 796
Query: 121 agggtttgctaaagagaataaatggccagggcagaggcaaagtcgctgtacaaggtttcg 180
|||||||||||||||||||| ||||||| |||
Sbjct: 795 ---------------------------agggcagaggcaaagtcgctatacaagg-ttc- 765
Query: 181 gtttccctggccttcaccctcagctttgtcacttagaatggtgatgatacttctagctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 gtttccctggccttcaccctcagctttgtcacttagaatggtgatgatacttctagctca 705
Query: 241 ctgtggtccttctggggaatttccccactggtcgtattaaatgagatccgtctttactga 300
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct: 704 ctgtggtccttctggggaatttccccactggtcttattaaatgagatctgtctttactga 645
Query: 301 ggcctaggtgactgctctcctgcaatgtgcagtttagccacaccagtcttcagcatcctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ggcctaggtgactgctctcctgcaatgtgcagtttagccacaccagtcttcagcatcctg 585
Query: 361 ccttggatcttaacactggctgctctgcctagatatttctttcctgcctgctctcctcat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 ccttggatcttaacactggctgctctgcctagatatttctttcctgcctgctctcctcat 525
Query: 421 tctctcctgtctctgagcaactgacacctgacattgtttgctctacacttaaaaacttac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 tctctcctgtctctgagcaactgacacctgacattgtttgctctacacttaaaaacttac 465
Query: 481 aacccagttctagattcaaccaagcagctttgcagtctctaagcatgccaatcagtgctg 540
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 464 aacccagttctagattcaaccaagcagctttgcagtttctaagcatgccaatcagtgctg 405
Query: 541 gggactctcagaaccatggaaggagagcttgcttttctgaacatgcagaggcacaac 597
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gggactttcagaaccatggaaggagagcttgcttttctgaacatgcagaggcacaac 348
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 597
Length of database: 995
Length adjustment: 10
Effective length of query: 587
Effective length of database: 985
Effective search space: 578195
Effective search space used: 578195
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
