BAC Information

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BAC

Clone NameMSMg01-338C21
Chromosome14 (Build37)
Map Location 94,478,089 - 94,478,623
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338C21.T7 (MSMg01no338_c21.b1)MSMg01-338C21.TJ (MSMg01no338_c21.g1)
ACCAG452775AG452776
length761737
length of high quality
(start - end)
---535 (78 - 612)
definitionCHROMAT_FILE: MSMg01no338_c21.b1 PHD_FILE: MSMg01no338_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:45 2005CHROMAT_FILE: MSMg01no338_c21.g1 PHD_FILE: MSMg01no338_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:26:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGCCGCTATACACTCCTATAGGGTCCGATCGCGGATTCTTTTGTTATCT
TCTGACAATTTTAAATGAGGTATTTGACNNNTGGAGCNCNTCTATTGAGT
TCCTTTANTCTTGAATATCACTCTCCNCCTGCCNTACTNTGGCTAGATCC
TTTCCCCAGATTGNNCCNCANATACCCNTCCTGACTTCNTTATCTTTATT
TCTCTTNAAGTCTCTCANAAACGTCTTTTCTCTTTNTTATTCTTTTGCTT
CTTCTTCTTACCCAATTGATTACATTTCCTAACTAATATTACTCCTTATG
TTTTTTTCTCCACAAAATTATCTGGTACTTCTGCATCTTCAGCCCCTTCT
TCTCCTTACAATGCTGCTTTATTACCCATCTTTCTACCTATTTNATTCTT
CATATCCTTNTTCTTCTATTCTANCNTTCTTTTTTTGTTATTTAATTTCT
CCACCTAGTCCCTCCCTCTTTCTTTCTTTCCTTCCTTTTTTTTTCTCCCG
TACTTTTATCTTCTTTTTTTTTCTCTATCCTTCTTTCCCCTTTTCTCCCC
TATTCCTTTTCCTTCTCTCTCCTATTATTTATAATCCCCTCTTTCTCCTC
TTTTTCCTTCCTCTTTTTTCCTTTTTTTCCACTTTCCTCGTTCCCTATNT
CTCCTTCTTTTCTCTTTTCCCTTATCTTCTCTCCTTTACCCTATCTCTTT
CTCTCCCCTCTACTTCCTCTTCGTCTCNTCCATTNTACTTTTTCTTCTTT
TCTTGCAATCT
NCCATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTTCTAAAGCAGCACAGCCTT
CTTACTCTTGGTTCCCTGAGTAATGAATGAATCTGTGGCACAATTTTTAT
TTGAACCATAACAGCCAATTGTATTCTCAGAATATGAAACTATTTATGTC
TATCCTGGAAAGTTTTCTCAGCCATATCCACAACCAAAAATGAAAAAAAA
AGAGCCCTGTGAGTTAATATATTTGTTTTACTTCTCTGTGTAACCAAGTA
TTATGTTCACTTATTTAACATCAAAATTATTAGTTCCCTATGCTTTTCAT
ATCAAGTTAATAGTCATTCATCTCCTTTTGTAGAGAGTACTTTAAAAATA
ATACAACCAATAAGGATAGTATTTTATCTTTCAGGATTGCTTCTAATATA
GAAACCCACTTGGGGAGAAATTTTCTTTCCATTATTGAACCTAAAAACGG
AGCATTAATGGTTCTTTTGATTCTTACTATCCTTTGTCAAAACAAATCCT
TTTGTGACTTAACTTCTCCAAAAGCTCAGGCACATAAAAGTGTTTTGAAG
TGACCCATCACGGAAATAGATATCCTCACATAGTCTCTCCCCTTTGTCTG
GTTTTTGCTCTAAAAAGGGTATATCTCCAGTTATGTTTTGAAACCCGGGG
CTCTTCTTCTCCTAAGATTCCACCTTAAAATAATGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_c21.g1 MSMg01no338_c21.g1 CHROMAT_FILE:
MSMg01no338_c21.g1 PHD_FILE: MSMg01no338_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:45 2005
         (535 letters)



>mm_chr14_94477889_94478823
          Length = 935

 Score = 1035 bits (535), Expect = 0.0
 Identities = 535/535 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtttctaaagcagcacagccttcttactcttggttccctgagtaatgaatgaatctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtttctaaagcagcacagccttcttactcttggttccctgagtaatgaatgaatctgtg 260

                                                                       
Query: 61  gcacaatttttatttgaaccataacagccaattgtattctcagaatatgaaactatttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcacaatttttatttgaaccataacagccaattgtattctcagaatatgaaactatttat 320

                                                                       
Query: 121 gtctatcctggaaagttttctcagccatatccacaaccaaaaatgaaaaaaaaagagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtctatcctggaaagttttctcagccatatccacaaccaaaaatgaaaaaaaaagagccc 380

                                                                       
Query: 181 tgtgagttaatatatttgttttacttctctgtgtaaccaagtattatgttcacttattta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgagttaatatatttgttttacttctctgtgtaaccaagtattatgttcacttattta 440

                                                                       
Query: 241 acatcaaaattattagttccctatgcttttcatatcaagttaatagtcattcatctcctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatcaaaattattagttccctatgcttttcatatcaagttaatagtcattcatctcctt 500

                                                                       
Query: 301 ttgtagagagtactttaaaaataatacaaccaataaggatagtattttatctttcaggat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgtagagagtactttaaaaataatacaaccaataaggatagtattttatctttcaggat 560

                                                                       
Query: 361 tgcttctaatatagaaacccacttggggagaaattttctttccattattgaacctaaaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgcttctaatatagaaacccacttggggagaaattttctttccattattgaacctaaaaa 620

                                                                       
Query: 421 cggagcattaatggttcttttgattcttactatcctttgtcaaaacaaatccttttgtga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cggagcattaatggttcttttgattcttactatcctttgtcaaaacaaatccttttgtga 680

                                                                  
Query: 481 cttaacttctccaaaagctcaggcacataaaagtgttttgaagtgacccatcacg 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttaacttctccaaaagctcaggcacataaaagtgttttgaagtgacccatcacg 735


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space:   485625
Effective search space used:   485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)