Query= MSMg01no338_e20.b1 MSMg01no338_e20.b1 CHROMAT_FILE:
MSMg01no338_e20.b1 PHD_FILE: MSMg01no338_e20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:54 2005
(573 letters)
>mm_chr14_30803063_30804035
Length = 973
Score = 1015 bits (525), Expect = 0.0
Identities = 557/573 (97%), Gaps = 11/573 (1%)
Strand = Plus / Plus
Query: 5 gaattctttgtttgttcggcccagtaatcagatgtctgtcggcttaaactatagttcgca 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtttgttgggcccagtaatcagatgtctgtcggcttaaactatagttcgca 264
Query: 65 aatgctaatctggtaccagtagcccgtggcggagactagggttgggaccttgctcagctt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aatgctaatctggtaccagtagcccgtggcggagactagggttgggaccttgctcagctt 324
Query: 125 tgctctgtcctagagacaaaaaggaggtagattggatctgaggtagaggattctataaca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgctctgtcctagagacaaaaaggaggtagattggatctgaggtagaggattctataaca 384
Query: 185 atcactagcctgtgactctcattcacatacccagtagaaagtcagcttagagagtccgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atcactagcctgtgactctcattcacatacccagtagaaagtcagcttagagagtccgtc 444
Query: 245 tctgtcaacatctcagggttttttttttttttttttggtttctctgtatagccctggcta 304
||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 445 tctgtcaacatctcagggtttttttgtttt------ggtttctctgtatagccctggcta 498
Query: 305 tcctggaactcactttgtaaaccaggctggcctcgaactcagaaatccgcctgcctctgc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcctggaactcactttgtaaaccaggctggcctcgaactcagaaatccgcctgcctctgc 558
Query: 365 ctcccgagtgctgggattaaaggcgtgcgccaccacgcctagcttaacatctcagtttta 424
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 559 ctcccgagtgctgggattaaaggcgtgcgccaccacacctggcttaacatctcagtttta 618
Query: 425 aagcgcactgac----ggatagtaagggtctagaacctgcccacatggccagaacctgcc 480
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aagcgcactgactgacggatagtaagggtctagaacctgcccacatggccagaacctgcc 678
Query: 481 ttggccttggcaggcatcctcacctgtatgcccagctcacttgagcatgggtataggttg 540
||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 679 ttggccttggcaggcatcctcac-tgtatgcccagctcacgtgagcatgggtataggttg 737
Query: 541 tgtgtgctgtggtgatcggtgcttatgctgttc 573
|||||||||||||||||||||||||||||||||
Sbjct: 738 tgtgtgctgtggtgatcggtgcttatgctgttc 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space: 542169
Effective search space used: 542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no338_e20.g1 MSMg01no338_e20.g1 CHROMAT_FILE:
MSMg01no338_e20.g1 PHD_FILE: MSMg01no338_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:26:54 2005
(615 letters)
>mm_chr14_30973165_30974179
Length = 1015
Score = 973 bits (503), Expect = 0.0
Identities = 543/563 (96%), Gaps = 13/563 (2%)
Strand = Plus / Minus
Query: 64 cagcctgggctacacagtgaattccaggacagcctgggctacacagagaaactctgactc 123
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 926 cagcctggtctacacagtgaattccaggacagcctgggctacacagagaaaccctgtctc 867
Query: 124 aaaacaaaac-----aaaacaaaaacaaaatttttaaaatctggg------gattttttt 172
|||||||||| ||||||||||||||||||| |||||||||| |||||||
Sbjct: 866 aaaacaaaacaaaataaaacaaaaacaaaattttaaaaatctgggtttttt--ttttttt 809
Query: 173 taaagttaagtgacacaaagaagatttcaaataaaagccaagaaaattgatcaacaaatc 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 taaagttaagtgacacaaagaagatttcaaataaaagccaagaaaattgatcaacaaatc 749
Query: 233 tacactataagaaatggtaaacgaaactcttcatgctaaaagaaaaataattttaggtag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 tacactataagaaatggtaaacgaaactcttcatgctaaaagaaaaataattttaggtag 689
Query: 293 aaacaaatacatattttagaaataagcaccaaaaaacccccacaaatgtaaagatcgagg 352
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 688 aaacaaatacatattttagaaataagcaccaaaaaaaccccacaaatgtaaagatcgagg 629
Query: 353 tgctccccccacacttctaaatttcttgaaatgatgtcatttaatttaaaaagtagtgtc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgctccccccacacttctaaatttcttgaaatgatgtcatttaatttaaaaagtagtgtc 569
Query: 413 aagcttccagagagagtgtcatgggcttatagggacccacagcagggacagggaaggttg 472
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aagcttccacagagagtgtcatgggcttatagggacccacagcagggacagggaaggttg 509
Query: 473 ggagggactaaggggagccttcctgttgtaaagtccttaaaataggtttgccatgctaat 532
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ggatggactaaggggagccttcctgttgtaaagtccttaaaataggtttgccatgctaat 449
Query: 533 gtaaggatgcatgacaaccttaatattttaaaaatgaaacacaataatgccacaaaccat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 gtaaggatgcatgacaaccttaatattttaaaaatgaaacacaataatgccacaaaccat 389
Query: 593 aaagagattaaacaggatcagtg 615
|||||||||||||||||||||||
Sbjct: 388 aaagagattaaacaggatcagtg 366
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
