BAC Information

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BAC

Clone NameMSMg01-338H08
Chromosome14 (Build37)
Map Location 24,515,618 - 24,690,530
singlet/doubletdoublet
Overlap geneKcnma1
Upstream gene1700112E06Rik, LOC665068
Downstream geneLOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-338H08.T7 (MSMg01no338_h08.b1)MSMg01-338H08.TJ (MSMg01no338_h08.g1)
ACCAG452981AG452982
length718748
length of high quality
(start - end)		640 (48 - 687)567 (63 - 629)
definitionCHROMAT_FILE: MSMg01no338_h08.b1 PHD_FILE: MSMg01no338_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:05 2005CHROMAT_FILE: MSMg01no338_h08.g1 PHD_FILE: MSMg01no338_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:27:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,689,895 - 24,690,530)(24,515,618 - 24,516,184)
sequence
NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTGTCTACCAGTCTCCAAAATGGGGTGGACAAGGCTGTCTTTC
AGAATGTAGAAAGGAAATATCAGACTATCAATTCAGATTTCCCTGTTCTT
CCCTTGTGGACTTCTGTGATGGTCCAGGTCTTCTTGCCCAGAAAATAGGA
GTGATACCACCCACTGATGAGGATCAGACAGCATAGCACCTTTAAAGCGT
CCTGTACTTGAAAAATAGCAGTCAAATATGAGAAAATATTAGAGTCATTT
AAAAGTGGTTTCTGCCATGTTTTCTCTAGAAAATACACCCTCTGTGTAGA
AGTCACAGGAGGCTGGACCTACAGGCTGGGACTCTTTGGGCTTTTCTGTC
CTGTGAGTCACAGTCTTCCCTCCCTGTGGCATGTCTGTCCCTGCTGTCTC
TGGTCATCTTCGGGCAGATCCTGGCTTAGCTTGTACTTCCCCAGTAGTCC
CACGTTAGTCCCTTATGAAAATGTTACATACCATTCAAGAAAAGCCCTTT
TGGTTTCCAGGATGGCAACACCGTCTCTTTCTGTCCTTTAGCCATTATGA
TAATTGCTTAGGCTGTAGTGCCAAGACAGCAAATAAATTGCCTGCTCTCT
CTGACATCCCAGTGCTGTTTTTACATCATGAATTGTCCCAGTGCGGAGAT
AATCCTTGCTTGTAATTT

GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCCCAATTCCACTGTGCCTGCTGCTTTGACTCACTGAGGTGGCTA
ATTGCAGCATCTGTGTTTCTCATCTGCCCAGAGCTTGCAGCTGTGTCACC
TTTGGACTCCTCTCCAGTGAGCCTCAAAATGGTATTTCACTTTTTGGGTC
CAAATGGACAATTTCTGAGAAGTCGGCATAACTCATGTAGCTTTGGAAAC
AAGTTTAAGTTGTTTTTGTACTTTCCATTACCCGGATTGTTCTGGAATGC
AGTGAGTAAGCGCCTCTGTTTCCCTTCCTCACAAGGAGCTCAAGACTTGG
GGAGGTGGGGAGCACTGTAGAATGCAGAGGACCAGACCAGATGAGCAGGT
CTGTGCTAGAGGGGCTAGCTCAAAAACTCAGGCGGGTCTCGCTATGGGAG
GACTCAGTAGTCTCCCCACCCTGGTCTGCTTCCACTGAGCTTGTAGACTC
AAATCAGCACTGAGAGCTCTGAACTGGAAAGCTCTCCCAGGCCTTCTCCC
TTACCCCTAGCAACGAGCAGCTCCAATAAAAAGATTCTTTTTTCAAAAGC
TGTATGCAACAAGGAAACAGAATTCCTGGAGGTAAGAGAGAGATATAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCCTTCAGTGTATTG
CTTGCAGTGTGTGCATGAAGATATGAATTTGTGTCTAGAAGCCCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no338_h08.b1 MSMg01no338_h08.b1 CHROMAT_FILE:
MSMg01no338_h08.b1 PHD_FILE: MSMg01no338_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:05 2005
         (640 letters)



>mm_chr14_24689691_24690730
          Length = 1040

 Score = 1214 bits (628), Expect = 0.0
 Identities = 634/636 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtctaccagtctccaaaatggggtggacaaggctgtctttcagaatgtagaa 64
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 840 gaattcttgtctagcagtctccaaaatggggtggacaaggctgcctttcagaatgtagaa 781

                                                                       
Query: 65  aggaaatatcagactatcaattcagatttccctgttcttcccttgtggacttctgtgatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 aggaaatatcagactatcaattcagatttccctgttcttcccttgtggacttctgtgatg 721

                                                                       
Query: 125 gtccaggtcttcttgcccagaaaataggagtgataccacccactgatgaggatcagacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 gtccaggtcttcttgcccagaaaataggagtgataccacccactgatgaggatcagacag 661

                                                                       
Query: 185 catagcacctttaaagcgtcctgtacttgaaaaatagcagtcaaatatgagaaaatatta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 catagcacctttaaagcgtcctgtacttgaaaaatagcagtcaaatatgagaaaatatta 601

                                                                       
Query: 245 gagtcatttaaaagtggtttctgccatgttttctctagaaaatacaccctctgtgtagaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gagtcatttaaaagtggtttctgccatgttttctctagaaaatacaccctctgtgtagaa 541

                                                                       
Query: 305 gtcacaggaggctggacctacaggctgggactctttgggcttttctgtcctgtgagtcac 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 gtcacaggaggctggacctacaggctgggactctttgggcttttctgtcctgtgagtcac 481

                                                                       
Query: 365 agtcttccctccctgtggcatgtctgtccctgctgtctctggtcatcttcgggcagatcc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 agtcttccctccctgtggcatgtctgtccctgctgtctctggtcatcttcgggcagatcc 421

                                                                       
Query: 425 tggcttagcttgtacttccccagtagtcccacgttagtcccttatgaaaatgttacatac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tggcttagcttgtacttccccagtagtcccacgttagtcccttatgaaaatgttacatac 361

                                                                       
Query: 485 cattcaagaaaagcccttttggtttccaggatggcaacaccgtctctttctgtcctttag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 cattcaagaaaagcccttttggtttccaggatggcaacaccgtctctttctgtcctttag 301

                                                                       
Query: 545 ccattatgataattgcttaggctgtagtgccaagacagcaaataaattgcctgctctctc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ccattatgataattgcttaggctgtagtgccaagacagcaaataaattgcctgctctctc 241

                                               
Query: 605 tgacatcccagtgctgtttttacatcatgaattgtc 640
           ||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgacatcccagtgctgtttttacatcatgaattgtc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1040
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1030
Effective search space:   648900
Effective search space used:   648900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no338_h08.g1 MSMg01no338_h08.g1 CHROMAT_FILE:
MSMg01no338_h08.g1 PHD_FILE: MSMg01no338_h08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:27:06 2005
         (567 letters)



>mm_chr14_24515418_24516384
          Length = 967

 Score = 1081 bits (559), Expect = 0.0
 Identities = 565/567 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccactgtgcctgctgctttgactcactgaggtggctaattgcagcatctgtgtttctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccactgtgcctgctgctttgactcactgaggtggctaattgcagcatctgtgtttctca 260

                                                                       
Query: 61  tctgcccagagcttgcagctgtgtcacctttggactcctctccagtgagcctcaaaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgcccagagcttgcagctgtgtcacctttggactcctctccagtgagcctcaaaatgg 320

                                                                       
Query: 121 tatttcactttttgggtccaaatggacaatttctgagaagtcggcataactcatgtagct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatttcactttttgggtccaaatggacaatttctgagaagtcggcataactcatgtagct 380

                                                                       
Query: 181 ttggaaacaagtttaagttgtttttgtactttccattacccggattgttctggaatgcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggaaacaagtttaagttgtttttgtactttccattacccggattgttctggaatgcag 440

                                                                       
Query: 241 tgagtaagcgcctctgtttcccttcctcacaaggagctcaagacttggggaggtggggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgagtaagcgcctctgtttcccttcctcacaaggagctcaagacttggggaggtggggag 500

                                                                       
Query: 301 cactgtagaatgcagaggaccagaccagatgagcaggtctgtgctagaggggctagctca 360
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cactgtagaatgcagaggtccagaccagatgagcaggtctgtgctagaggggctagctca 560

                                                                       
Query: 361 aaaactcaggcgggtctcgctatgggaggactcagtagtctccccaccctggtctgcttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaaactcaggcgggtctcgctatgggaggactcagtagtctccccaccctggtctgcttc 620

                                                                       
Query: 421 cactgagcttgtagactcaaatcagcactgagagctctgaactggaaagctctcccaggc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactgagcttgtagactcaaatcagcactgagagctctgaactggaaagctctcccaggc 680

                                                                       
Query: 481 cttctcccttacccctagcaacgagcagctccaataaaaagattcttttttcaaaagctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttctcccttacccctagcaacgagcagctccaataaaaagattcttttttcaaaagctg 740

                                      
Query: 541 tatgcaacaaggaaacagaattcctgg 567
           ||||||||||||||| |||||||||||
Sbjct: 741 tatgcaacaaggaaaaagaattcctgg 767


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space:   533049
Effective search space used:   533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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