BAC Information

Click to search

BAC

Clone NameMSMg01-339D17
Chromosome14 (Build37)
Map Location 27,253,491 - 27,433,858
singlet/doubletdoublet
Overlap geneSlmap, LOC100039353, LOC665279, A630054L15Rik
Upstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213, LOC100039227, LOC100039503, LOC100039246, LOC100039257, LOC100039280, LOC100039293, LOC100039527, LOC100039538, 4933413J09Rik
Downstream geneArf4, E430028B21Rik, 4921531P07Rik, Dnahc7c, Asb14, Appl1, Hesx1, Il17rd, LOC665333, Arhgef3, LOC100040147, Ccdc66, LOC665370
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339D17.T7 (MSMg01no339_d17.b1)MSMg01-339D17.TJ (MSMg01no339_d17.g1)
ACCAG453570AG453571
length751746
length of high quality
(start - end)		601 (44 - 644)581 (76 - 656)
definitionCHROMAT_FILE: MSMg01no339_d17.b1 PHD_FILE: MSMg01no339_d17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:01 2005CHROMAT_FILE: MSMg01no339_d17.g1 PHD_FILE: MSMg01no339_d17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,253,491 - 27,254,088)(27,433,461 - 27,433,858)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGTACTTAGCAATTCGAAAGCCAGCCTAAGCTACATAAATCTGTTT
CAAAATTGAGAACAAAGCAAAGAAAGGATGAAGAGAAAGAAGATGGAGCT
GTAGTTTCTGGCTGTATGTGCCAAAAGTCTCTAGTCTCTGTTCTAAACTC
TCAGCCTCCTTTGTAGTTCCTACCATGAGCATGCAAAACCAGGACGTTTT
CTCTCATTATAATAACATCCTTTCAACCACCCCAAGCCAAGATGGAGTTC
ATGCCTTTCTCTCTCTCCTTTATTACGGCATGCATGCATCATAGGATATG
CTTCTAAAGTCATCACAAATGATCTTCCTTTCAAGAGGCCCCAACTGAGT
TTCTAGCATCACAACCAAACCAACCAAATAAACAAACAAAAACCCAACTG
GCTTATCACCTACCCTTCTCTGTCTTCAGAATGACAAAGGAAGCAAACAC
TTTTGTGGGATCTTTAAGGACCACTGTAAAATACTTAAGAGAAATAACAG
TAGAGTCACAGCTCCTAGAGCAGGAGGCCTGACAAACTGTGCCGAGGCTA
CATGGAAGGAGCTCCTAGGAACAGGCGCCAGCCGGTCCGGAACCAGAAGT
GAGGAGCTGTGGCAAGTACCTCGACTAGCAGTCAGCAAGGAGTTTCTGAG
TAAAGGCACGAATGGACTGCACTAAACATCACTAGGCCACATTAGAAGAG
G

CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCAAATGTCACACAACTGCAGAAACT
ATCTGTACCTAGCAAAACCATGCCACTGCTAGAGCATGAGGTAAGTCAAA
GTCAGGTGCTGTGGTCATTCAAAGCATCCCCACATCTCCATATCTGGGAT
TAAAACAAGAGCACACATTCTTATATTTCTGTGTGTTTTAAAGAAACCAA
AATCCAAAATTGTCATTACAGGGACTCAGAGAGTAAAACAATAAAAAATT
TACAAAGCATGTCTGATAAGAGACCAGCACCCAGACATATAAAGAACTGA
GACAACCAATGATGAGAAGTCTTAAACATTTCCAAAGAAGGCATATAAAA
GACTCATGTAAAGACACTCGACATTATTAATCACTAGGGAAAAGAAAATG
TAAACCTGTTGGGGTGACCTTCCTTACATTGTATTTATTATGCTGCATTT
TTAATTGTTAATTCTGTACCAGCAGAGAGAGAAGTGCTGGCAGGATCTGG
TGTCGACATCTCCATGACCATCACCAGGTTTTCTTTTATAAATGTTTTTC
CTTCCACACCTGCCCAAAACACATGCAGGTGGGGCAACCTTCACTGACTA
AAGTAGCCAAAGAGATGTTTTGCCATTGTCTTACTGCTGNATGGGAATAA
AAAAGAGCTGGCAGCCAAGTGCTGGGGCAAACGTGGTGGAACTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_d17.b1 MSMg01no339_d17.b1 CHROMAT_FILE:
MSMg01no339_d17.b1 PHD_FILE: MSMg01no339_d17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:01 2005
         (601 letters)



>mm_chr14_27253288_27254288
          Length = 1001

 Score = 1040 bits (538), Expect = 0.0
 Identities = 583/598 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaagtacttagcaattcgaaagccagcctaagctacataaatctgtttcaaaat 63
           ||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 204 ggaattcaagtacttaggaattctaaagccagcccaagctacataaatctgtttcaaaat 263

                                                                       
Query: 64  tgagaacaaagcaaagaaaggatgaagagaaagaagatggagctgtagtttctggctgta 123
           |||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 tgagaacaaaacaaagaaatgatgaagagaaagaagatagagctgtagtttctggctgta 323

                                                                       
Query: 124 tgtgccaaaagtctctagtctctgttctaaactctcagcctcctttgtagttcctaccat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgccaaaagtctctagtctctgttctaaactctcagcctcctttgtagttcctaccat 383

                                                                       
Query: 184 gagcatgcaaaaccaggacgttttctctcattataataacatcctttcaaccaccccaag 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 384 aagcatgcaaaaccaggacgttttctctcattataataacatcctttcaaccatccgaag 443

                                                                       
Query: 244 ccaagatggagttcatgcctttctctctctcctttattacggcatgcatgcatcatagga 303
           |||||||||||||||||| ||||||||||||||||  || ||||||||||||||||||||
Sbjct: 444 ccaagatggagttcatgcttttctctctctcctttggtatggcatgcatgcatcatagga 503

                                                                       
Query: 304 tatgcttctaaagtcatcacaaatgatcttcctttcaagaggccccaactgagtttctag 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatgcttctaaagtcatcacaaatgatcttcctttcaagaggccccaactgagtttctag 563

                                                                       
Query: 364 catcacaaccaaaccaaccaaataaacaaacaaaaacccaactggcttatcacctaccct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 catcacaaccaaaccaaccaaataaacaaacaaaaacccaactggcttatcacctaccct 623

                                                                       
Query: 424 tctctgtcttcagaatgacaaaggaagcaaacacttttgtgggatctttaaggaccactg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 tctctgtcttcagaatgacaaaggaagcaaacacttttgtgggatctttaaggaccactg 683

                                                                       
Query: 484 taaaatacttaagagaaataacagtagagtcacagctcctagagcaggaggcctgacaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 taaaatacttaagagaaataacagtagagtcacagctcctagagcaggaggcctgacaaa 743

                                                                     
Query: 544 ctgtgccgaggctacatggaaggagctcctaggaacaggcgccagccggtccggaacc 601
           |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 744 ctgtgccgaggctacatggaaggagctcctaggaacgggcaccagccggtccggaacc 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_d17.g1 MSMg01no339_d17.g1 CHROMAT_FILE:
MSMg01no339_d17.g1 PHD_FILE: MSMg01no339_d17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:01 2005
         (581 letters)



>mm_chr14_27432878_27433858
          Length = 981

 Score =  746 bits (386), Expect = 0.0
 Identities = 395/398 (99%)
 Strand = Plus / Minus

                                                                       
Query: 184 attgtcattacagggactcagagagtaaaacaataaaaaatttacaaagcatgtctgata 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 981 attgtcattacagggactcagagagtaaaacaataaaaaatttacaaagcatgtctgata 922

                                                                       
Query: 244 agagaccagcacccagacatataaagaactgagacaaccaatgatgagaagtcttaaaca 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 agagaccagcacccagacatataaagaactgagacaaccaatgatgagaagtcttaaaca 862

                                                                       
Query: 304 tttccaaagaaggcatataaaagactcatgtaaagacactcgacattattaatcactagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tttccaaagaaggcatataaaagactcatgtaaagacactcgacattattaatcactagg 802

                                                                       
Query: 364 gaaaagaaaatgtaaacctgttggggtgaccttccttacattgtatttattatgctgcat 423
           ||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||
Sbjct: 801 gaaaagaaaatgtaaacctattggggtgaccttccttacagtgtattgattatgctgcat 742

                                                                       
Query: 424 ttttaattgttaattctgtaccagcagagagagaagtgctggcaggatctggtgtcgaca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttttaattgttaattctgtaccagcagagagagaagtgctggcaggatctggtgtcgaca 682

                                                                       
Query: 484 tctccatgaccatcaccaggttttcttttataaatgtttttccttccacacctgcccaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctccatgaccatcaccaggttttcttttataaatgtttttccttccacacctgcccaaa 622

                                                 
Query: 544 acacatgcaggtggggcaaccttcactgactaaagtag 581
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acacatgcaggtggggcaaccttcactgactaaagtag 584


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 981
Length adjustment: 10
Effective length of query: 571
Effective length of database: 971
Effective search space:   554441
Effective search space used:   554441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |