BAC Information

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BAC

Clone NameMSMg01-339F08
Chromosome14 (Build37)
Map Location 84,411,333 - 84,411,732
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339F08.T7 (MSMg01no339_f08.b1)MSMg01-339F08.TJ (MSMg01no339_f08.g1)
ACCAG453644AG453645
length832729
length of high quality
(start - end)		69 (49 - 117)430 (58 - 487)
definitionCHROMAT_FILE: MSMg01no339_f08.b1 PHD_FILE: MSMg01no339_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:08 2005CHROMAT_FILE: MSMg01no339_f08.g1 PHD_FILE: MSMg01no339_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTAATAAATGCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTCAGCTTCCTGGACCTGCCACCAGGTCTATTGCTCATTCACA
TGTTATGCTTGACATCACGGAGCCTAACACATTGGAGCCATAAGNCGAAA
TATATTCTTCTATAANTTGCCTTGGANAGNCGTTNTTACACNNNNGGAAA
AGGGAANGGTAATAAGGAGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGAGGGGGGGGGGGGGGGGGGGGGGAGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGAACGTATTTTTTTTTTTCCCCGGCCGGGGGGAAAAA
AGGGGAAAAAAAATAAACCCCCGGGCNNGGGGGGGGGGAAAATTCTTTAG
GGGGGGTTTTTTTTGGGGTTTATGGGGGGAGAAAATCTCTGGGGAAACCC
GGGGGTTTTAAAAAAAAAACTCTGTTTTTTTTTCTTTTAAAAAAAAAACA
GGGGGGGGGGGGGGGGGGTTTTCTCCCCCTCAATTTTTTTTTTTTTTTTT
TTTTAAAAAAAAATTCTTTTGTCTCCTACTAAAAAAATAATCTTTTTTTT
TTTTCTCTTTTAAAAAAAATTATACTACATTTCTTCCTTCCCCCACAAAA
TTATCCCCTCCCCCTCTATTATATAATTCTTTCTTTCTTTGTGAAATAAA
ACAACATCACTTCCCTCCACCCGGGGGGGGGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXAGACATGTTTTTTAAATATACAACACATGCATTATTCTTGTTA
AATTAGGACTTAATGAAACAAAATGGGATTATATTTTTGTCTGTTCACCT
AATTGAAAGGCTAATAAAAGGAAGAAAAACAGAAATATTTGAGTGAATAT
ACTTTGTTACTACAACATTCACAGTCTATCACAAGTCTGCTTTCTTTATT
TATTGTGTTTTATTTTTCTAAAAAATATTATAAATAACTAAACTATAATA
TGCTTTTACTTGGCTCCTCAATATGTCTGTGTTTATGTTCCAAGAGGAGT
TGTAAAATAATCTCCATGAGTCAGCAATACATCCCTTTCAATAGTGCAGA
TCAACATTATGGAAACAGCATAAAAGGAAATACATTAACATTTCAGAAAG
ATGAGATGCTCCATTTACTGTAAAAGGTGCTATGAAAATGGTAGAATGTC
ACGGNATCTTACTCATTTGTTTTTGAAAATATATATATTTTTTCTTTCTA
ATGGATATATTTTAAAATGGACACATTGCATGCAGTTCTAGAATAAGGGC
CTCCCATTATAATAAATAGGGTTTTTCTGCAAGCTATTTCTCCTACTAAA
ACCTCCCAAAATATCTGAGACCTGGTACTTTTCCCTTTAAGGACAGGGGT
CCCACCACCAAAAATTGGCATTTTTAAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_f08.g1 MSMg01no339_f08.g1 CHROMAT_FILE:
MSMg01no339_f08.g1 PHD_FILE: MSMg01no339_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:08 2005
         (430 letters)



>mm_chr14_84410903_84411732
          Length = 830

 Score =  708 bits (366), Expect = 0.0
 Identities = 393/404 (97%), Gaps = 4/404 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  atgcattattcttgttaaattaggacttaatgaaacaaaatgggattatatttttgtctg 86
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 atgcattatttttgttaaattaggacttaatgaaacaaaatgggattatatttttgtctg 771

                                                                       
Query: 87  ttcacctaattgaaaggctaataaaaggaagaaaaacagaaatatttgagtgaatatact 146
           |||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 770 ttcatctaattgaaaggctaataaaaggaagaaaaccagaaatatatgagtgaatatact 711

                                                                       
Query: 147 ttgttactacaacattcacagtctatcacaagtctgctttctttatttattgtgttttat 206
           ||| |||||||||||||||||||||||||||||||||||||    |||||||||||||||
Sbjct: 710 ttgctactacaacattcacagtctatcacaagtctgctttc----tttattgtgttttat 655

                                                                       
Query: 207 ttttctaaaaaatattataaataactaaactataatatgcttttacttggctcctcaata 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 ttttctaaaaaatattataaataactaaactataatatgcttttacttggctcctcaata 595

                                                                       
Query: 267 tgtctgtgtttatgttccaagaggagttgtaaaataatctccatgagtcagcaatacatc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tgtctgtgtttatgttccaagaggagttgtaaaataatctccatgagtcagcaatacatc 535

                                                                       
Query: 327 cctttcaatagtgcagatcaacattatggaaacagcataaaaggaaatacattaacattt 386
           ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 534 cctttcaatagtgtagatcaacattatagaaacagcataaaaggaaatacattaacattt 475

                                                       
Query: 387 cagaaagatgagatgctccatttactgtaaaaggtgctatgaaa 430
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 cagaaagatgagatgctccatttactgtaaaaggtgctatgaaa 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 830
Length adjustment: 9
Effective length of query: 421
Effective length of database: 821
Effective search space:   345641
Effective search space used:   345641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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