BAC Information

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BAC

Clone NameMSMg01-339F24
Chromosome14 (Build37)
Map Location 60,168,771 - 60,365,651
singlet/doubletdoublet
Overlap geneCdadc1, Tmem46, Atp8a2
Upstream geneEG668177, EG668182, 1700129C05Rik, EG380907, Rcbtb1, EG628693, Phf11, EG236451, D14Ertd668e, EG628705, Setdb2, Cab39l
Downstream geneLOC668162, LOC628768, Nupl1, Mtmr6, 2600011E07Rik, Ppia-ps14_696.1, EG628836, Spata13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339F24.T7 (MSMg01no339_f24.b1)MSMg01-339F24.TJ (MSMg01no339_f24.g1)
ACCAG453675AG453676
length749712
length of high quality
(start - end)
464 (78 - 541)395 (59 - 453)
definitionCHROMAT_FILE: MSMg01no339_f24.b1 PHD_FILE: MSMg01no339_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:11 2005CHROMAT_FILE: MSMg01no339_f24.g1 PHD_FILE: MSMg01no339_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:11 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,365,363 - 60,365,651)(60,168,771 - 60,169,165)
sequence
NNTTTTTTCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCCGCGGAATTCCAGGATTGCCAAGAAGGAAGCAGAGCCGGGTGGTGG
TGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTT
CTGAGTTCGAGGCCAACCTGGTCTACAGAGTGAGTTCCAGGACAGCCAAG
GCTACACAGAAAAGTCCTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAA
AAAAGAAGGAAGCAGAGCCGGCGGTTCCTGAGAAGGGGTTTAATATAAAT
GTGCGGCTTCATAGAGAGGTGCTCAGCCAAAGAATAAAATACCCAGGTGC
CCTGTGGCTTCTCAGAGGAGATTCTCACCTCATTGTCTGAGCAGTGGCCA
TGTGTGTGACTTTGGTGGCTCCAAGTTTCAACTCAAAGAGTTGCTGAGAA
ACCTTTTATTTCTTTTCTGTCCCCCTCTTTTTTAATAAATGAAATCATGG
GGTGGCTCTAGAGGCACCTTAGGTAGGATTACAGTTCAATAAGGTTAGCC
GTGCACACAAGAGGATAACACATGTCTCACTATAGATGGGATTCCTTGCC
AGATTGCTCAGATTATAAGTGGATGCCCTTAAACGGGTGGGATTTCTTTG
CCATCAGAAGTTTCCCCATCTGAATTCTGGTGGAAGGGAAAATCCCCTAT
TGGAAACCAGGCCGGCTTTTGAACTTCTCGAAAAAATTCTTTCCGGGCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXACCACTGGATAAAGATCTGAAGCATTTGAGACCTTGGAAGTC
TAGATTTGGTCCGACTGTGTCCTCTGATCCAGGAGTATGGTTTGGTTTTG
AAGTTAGGAGAGTGTGTGTTGTGGTTGGCACAATTAAAGCGCAGCAGAGT
TATGCCTGCCTATGCTAGGCCATGCAGACACAGCCTTACCTCCCATGGCG
GGGAACAACATTGAGCCTCAGAAAGGGTGAGGGGGCCTGCTCCTGATCAT
TCAACTGGCAGTAAAGCCAAAAATGCTGAGTCTTGGAAGACAGGTTGTCC
TCACAAGGGTGTGCTCCAGCCTACCTTCTAGGTAGGCCCCTCATCCCCAC
ATGGCCTAAGAAAAGAGGAGAACTCAGATCTGGGTGTACTGGGACAACTC
TCAGCTACTCACAGCCATGCAGCTAGGCCTCTCCCTGCACACATGCACCC
CTGTCCGCTAGTCCCGTCAGCCACAGCTCATCATCTTAAGGCTTGGGTAA
CCCCCGTCCCCACCCAAATTGTTCTGACCCTTAAACAAATGGCCTCCCCC
GGCTGTGGCCTGTCCCTATTGGCCTCGACTATTTACAGGTTGCAACCCTA
ATATCCCCTTGAATTCCCCACTCTCCCAATTACCTCTTGTTTCCCTTATC
ATACTCCTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_f24.b1 MSMg01no339_f24.b1 CHROMAT_FILE:
MSMg01no339_f24.b1 PHD_FILE: MSMg01no339_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:11 2005
         (464 letters)



>mm_chr14_60364988_60365851
          Length = 864

 Score =  551 bits (285), Expect = e-161
 Identities = 288/289 (99%)
 Strand = Plus / Minus

                                                                       
Query: 176 aagaaggaagcagagccggcggttcctgagaaggggtttaatataaatgtgcggcttcat 235
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 aagaaggaagcagagccggcggttcctgagaaggggtttaatataaatgtgcggcttcat 605

                                                                       
Query: 236 agagaggtgctcagccaaagaataaaatacccaggtgccctgtggcttctcagaggagat 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agagaggtgctcagccaaagaataaaatacccaggtgccctgtggcttctcagaggagat 545

                                                                       
Query: 296 tctcacctcattgtctgagcagtggccatgtgtgtgactttggtggctccaagtttcaac 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 tctcacctcattgtctgagcagtggccatgtgtgtgactttggtggctccaagtttcaac 485

                                                                       
Query: 356 tcaaagagttgctgagaaaccttttatttcttttctgtccccctcttttttaataaatga 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tcaaagagttgctgagaaaccttttatttcttttctgtccccctcttttttaataaatga 425

                                                            
Query: 416 aatcatggggtggctctagaggcaccttaggtaggattacagttcaata 464
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 aatcatggtgtggctctagaggcaccttaggtaggattacagttcaata 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no339_f24.g1 MSMg01no339_f24.g1 CHROMAT_FILE:
MSMg01no339_f24.g1 PHD_FILE: MSMg01no339_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:11 2005
         (395 letters)



>mm_chr14_60168571_60169365
          Length = 795

 Score =  764 bits (395), Expect = 0.0
 Identities = 395/395 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   accactggataaagatctgaagcatttgagaccttggaagtctagatttggtccgactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accactggataaagatctgaagcatttgagaccttggaagtctagatttggtccgactgt 260

                                                                       
Query: 61  gtcctctgatccaggagtatggtttggttttgaagttaggagagtgtgtgttgtggttgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctctgatccaggagtatggtttggttttgaagttaggagagtgtgtgttgtggttgg 320

                                                                       
Query: 121 cacaattaaagcgcagcagagttatgcctgcctatgctaggccatgcagacacagcctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaattaaagcgcagcagagttatgcctgcctatgctaggccatgcagacacagcctta 380

                                                                       
Query: 181 cctcccatggcggggaacaacattgagcctcagaaagggtgagggggcctgctcctgatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctcccatggcggggaacaacattgagcctcagaaagggtgagggggcctgctcctgatc 440

                                                                       
Query: 241 attcaactggcagtaaagccaaaaatgctgagtcttggaagacaggttgtcctcacaagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attcaactggcagtaaagccaaaaatgctgagtcttggaagacaggttgtcctcacaagg 500

                                                                       
Query: 301 gtgtgctccagcctaccttctaggtaggcccctcatccccacatggcctaagaaaagagg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgctccagcctaccttctaggtaggcccctcatccccacatggcctaagaaaagagg 560

                                              
Query: 361 agaactcagatctgggtgtactgggacaactctca 395
           |||||||||||||||||||||||||||||||||||
Sbjct: 561 agaactcagatctgggtgtactgggacaactctca 595


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)