BAC Information

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BAC

Clone NameMSMg01-339K06
Chromosome14 (Build37)
Map Location 25,768,258 - 25,933,476
singlet/doubletdoublet
Overlap geneLOC100039411
Upstream geneKcnma1, LOC620499, Dlg5, LOC100039335, E330034G19Rik, LOC669325, Polr3a, Rps24, LOC669315
Downstream geneZmiz1, I920194n01, LOC100039007, 4931406H21Rik, Ppif, 2310047A01Rik, Anxa11, Plac9, D14Ertd449e, Cphx, 1110051B16Rik, LOC100039468, LOC100039484, LOC100039175, LOC100039192, LOC100039213
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-339K06.T7 (MSMg01no339_k06.b1)MSMg01-339K06.TJ (MSMg01no339_k06.g1)
ACCAG453876AG453877
length757745
length of high quality
(start - end)		510 (51 - 560)439 (67 - 505)
definitionCHROMAT_FILE: MSMg01no339_k06.b1 PHD_FILE: MSMg01no339_k06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:31 2005CHROMAT_FILE: MSMg01no339_k06.g1 PHD_FILE: MSMg01no339_k06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:28:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,768,258 - 25,768,761)(25,933,167 - 25,933,476)
sequence
CCGCTCCGTTACGTTGCGGXXXXXXXXXXXXXXXXXXXXXTTCGAGAGGA
TCCGCGGAATTCAGCATGTTGCACTTAGTTTTGCCAACTTTAAACAAACC
TAGACACACACGGGAAAAGTTCCCTCTATCAAATTGTCACATGGATATGT
GGGGGAAGGAGCATTTTCTTGATTATTGACTGATGGACCCAGTCCACTGT
GGTGTGCCATCCTTAGAAAGGAAGGCCTAGATTATCTAAGAAACCAAGCT
GATCAAAGCCATGAGGAGCAAGCTGGTAAGCAATGTTTCTTCATGGTCTC
TGCTTTAGTTCCCGCCTTGGTTTTATAAACCATTTCCTCCTAATTTGCTT
TTTATCATAGTGTTTATTACAACAGAGAGCAATCTAGAGTTTCCTCATAT
AAGGGTAAAAACTTGGGGCTTGGTTTGTATTTCCCTACTGGCTTAACGGG
GCTGGACAGTTTATAGATGAGTGTCCTTCAGTATGAGTCCAGTGGCTCTT
CTGAGTTGTTAATTCCAGTGCAATTAGTTTAGAAGTCTGTACAGCAAGAA
TGATGCACACAAGTGGCTCTCCTTGCTCTAGGGGGAGCTTGGTAACAGAG
GAAACACATGGTCGCATCTGCTGCCATTTTGAATCCAGACTAGGCCCCTC
TGTTTGAACTCTACCTCCTTTTTGACCTTTCAAGTTGATATTGGGAACTC
AAATTCTTTTTCCCCCCTGTGCGACTAATTTTCCTTTTTTGTTTCTCCCA
TTTATAN

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXATACTGAGCCGACTGCTATGCCAGGCTTTTAATA
TTTCTGCCATTCATCTAGTTATTCTTTAAATGTTTATTTAGAGCTATTAT
GTGCCATTGCGCTGGGCCAGAAACTGGAGTTGCCAAAGTCGTGGTCCTTG
CTTTTAAGTAGCTCATGATCTTTCAAAGAAGACAGAAGGCCATCGAATCC
TGAGCTGATGACCTGAACTCAGGGCTCAGTATGGCAAACAAAAGGCCAAG
GACTGAGCTTAAACCTTAGCATCTCCACTTCCGGAACTTCATAATCTTTG
TGGATCTCAGTTTCTTTATCTGTAAAATGGGAGGAAGTAGGAATACAAGT
GGGCAACGTTATGAACATTCTCTTCACAAAATTTTAGAATCCATTTGTAC
TTTTTAAAAGTCAGTCATGCATTGGTTTGAAATTTTACTAAGATACAAAT
TCCAACCAAGTGGGTACCAGTATGAACACTGCTACTTTCTTCACGGAACA
AAAGATAAAACTGAGCTTAATACTTTTGATATCAAAGGTCAATTATTTTG
TAGTTTCAAATCCTCCCCCCGTGGGCATTCTCTTTTGGTGGAACATTGAC
TAACCCTGTGGTAATGGAAAAAAAAGATTGCCCTGTTCTTATCTTCTTAC
CTTGTATTCTTTCTTTGAAATTGTATCTCTTTCCTTGCGTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no339_k06.b1 MSMg01no339_k06.b1 CHROMAT_FILE:
MSMg01no339_k06.b1 PHD_FILE: MSMg01no339_k06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:31 2005
         (510 letters)



>mm_chr14_25768052_25768961
          Length = 910

 Score =  936 bits (484), Expect = 0.0
 Identities = 499/504 (99%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcagcatgttgcacttagttttgccaactttaaacaaacctagacacacacgggaa 66
           |||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcagcatggtgcacttagttatgccaactttaaacaaacctagacacacacgggaa 266

                                                                       
Query: 67  aagttccctctatcaaattgtcacatggatatgtgggggaaggagcattttcttgattat 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 aagttccctctatcaaattgtcacatggatatgtgggggaaggagcattttcttgattat 326

                                                                       
Query: 127 tgactgatggacccagtccactgtggtgtgccatccttagaaaggaaggcctagattatc 186
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 tgactgatggacccagcccactgtggtgtgccatccttagaaaggaaggcctagattatc 386

                                                                       
Query: 187 taagaaaccaagctgatcaaagccatgaggagcaagctggtaagcaatgtttcttcatgg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 taagaaaccaagctgatcaaagccatgaggagcaagctggtaagcaatgtttcttcatgg 446

                                                                       
Query: 247 tctctgctttagttcccgccttggttttataaaccatttcctcctaatttgctttttatc 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tctctgctttagttcccgccttggttttataaaccatttcctcctaatttgctttttatc 506

                                                                       
Query: 307 atagtgtttattacaacagagagcaatctagagtttcctcatataagggtaaaaacttgg 366
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 507 atagtgtttattacaacagagagcaatctagagtttcctcatataagggtcaaaacttgg 566

                                                                       
Query: 367 ggcttggtttgtatttccctactggcttaacggggctggacagtttatagatgagtgtcc 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ggcttggtttgtatttccctactggcttaacggggctggacagtttatagatgagtgtcc 626

                                                                       
Query: 427 ttcagtatgagtccagtggctcttctgagttgttaattccagtgcaattagtttagaagt 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttcagtatgagtccagtggctcttctgagttgttaattccagtgcaattagtttagaagt 686

                                   
Query: 487 ctgtacagcaagaatgatgcacac 510
           |||||||||||||| |||||||||
Sbjct: 687 ctgtacagcaagaaggatgcacac 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no339_k06.g1 MSMg01no339_k06.g1 CHROMAT_FILE:
MSMg01no339_k06.g1 PHD_FILE: MSMg01no339_k06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:28:31 2005
         (439 letters)



>mm_chr14_25932638_25933476
          Length = 839

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Minus

                                                                       
Query: 130 ccttgcttttaagtagctcatgatctttcaaagaagacagaaggccatcgaatcctgagc 189
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 839 ccttgcttttaagtagctcatgatctttcaaagaagacagaaggccatcgaatcctgagc 780

                                                                       
Query: 190 tgatgacctgaactcagggctcagtatggcaaacaaaaggccaaggactgagcttaaacc 249
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 779 tgatgacctgaactcagggctcagtatggcaaacaaaaggccaaggactgagcttaaacc 720

                                                                       
Query: 250 ttagcatctccacttccggaacttcataatctttgtggatctcagtttctttatctgtaa 309
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 ttagcatctccacttccggaacttcataatctttgtggatctcagtttctttatctgtaa 660

                                                                       
Query: 310 aatgggaggaagtaggaatacaagtgggcaacgttatgaacattctcttcacaaaatttt 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 aatgggaggaagtaggaatacaagtgggcaacgttatgaacattctcttcacaaaatttt 600

                                                                       
Query: 370 agaatccatttgtactttttaaaagtcagtcatgcattggtttgaaattttactaagata 429
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 agaatccatttgtactttttaaaagtcagtcatgcattggtttgaaattttactaagata 540

                     
Query: 430 caaattccaa 439
           ||||||||||
Sbjct: 539 caaattccaa 530


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space:   356900
Effective search space used:   356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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