BAC Information

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BAC

Clone NameMSMg01-340A24
Chromosome14 (Build37)
Map Location 50,527,529 - 50,527,787
singlet/doubletsinglet
Overlap genenone
Upstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722
Downstream geneOlfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340A24.T7 (MSMg01no340_a24.b1)MSMg01-340A24.TJ (MSMg01no340_a24.g1)
ACCAG454193AG454194
length773753
length of high quality
(start - end)
264 (51 - 314)548 (81 - 628)
definitionCHROMAT_FILE: MSMg01no340_a24.b1 PHD_FILE: MSMg01no340_a24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:01 2005CHROMAT_FILE: MSMg01no340_a24.g1 PHD_FILE: MSMg01no340_a24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNAAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCAGACAGCTGCGACCAGTTTGTCAAAACACATAAGTTCC
TTATAGCACCATAAAGTTACTTCCCAGGTCAGAAGAGTCCCACCAACCCC
ACCCCCACTTAAACAATTCTGCCCCGCTGCCTAAACAAATGATATCAATA
TCGGGTTTGACATCTTCCCCTGTCACCTCCCCCTGTCATCCTGAAGTCGG
AGAATCCATTTATGCCTCTATAAAAACGCCAAGCCCCTAAACGGGGGGGG
GGGGAAGGGGGGNNAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATAACTCACTTAAAGAGAT
ACAGGAGAACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAA
ACACTGCTAAAGAGTTACAAGTCCTTAAAGAAAAACAGGAAAACACAACC
AAACAGGTAGAAGTCCTTATAGAAAAACAGGAAAACACATCCAAACAGGT
GATGGAAATGAACAAAACCATACTAGACCTAAAAAGGGAAGTAGACACAA
TAAAGAAAACCCAAAGTGAGGCAACGCTGGAGATAGAAACCCTAGGAAAG
AAATCTGGAACCATAGATGCCAGCATCAGCAACAGAATACAAGAGATGGA
AGAGAGAATCTCAGGTGCAGAAGACTCCATAGAGAACATCGGCACAACAA
TCAAAGAAAATGGAAAATGCAAAAAGATCCTAACTCAAAACATCGAGGAA
ATCCAGGAAACAATGAGAAGACCAAACCTACAGATAATAGGAGTGGATGA
GAATGAAGATTTTCAACTAAAAGGACCAGCAAACATCTTCAACAAAATTA
TTGAAGAAAACTTCCCAAATCTAAAGAAAGAGATGCCCATGAACATACAA
GAAGCCTACAGAACTCCAAATAGACTGGACCAGAAAAGAAATTTCCTCCC
GACCCCAATTAATCCGAACATCAAATGCGCTATATAAAGATAGAATACTA
AAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_a24.b1 MSMg01no340_a24.b1 CHROMAT_FILE:
MSMg01no340_a24.b1 PHD_FILE: MSMg01no340_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:01 2005
         (264 letters)



>mm_chr14_50527325_50527989
          Length = 665

 Score =  485 bits (251), Expect = e-142
 Identities = 257/259 (99%), Gaps = 1/259 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagacagctgcgaccagtttgtcaaaacacataagttccttatagcaccataa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagacagctgcgaccagtttgtcaaaacacataagttccttatagcaccataa 264

                                                                       
Query: 65  agttacttcccaggtcagaagagtcccaccaaccccacccccacttaaacaattctgccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agttacttcccaggtcagaagagtcccaccaaccccacccccacttaaacaattctgccc 324

                                                                       
Query: 125 cgctgcctaaacaaatgatatcaatatcgggtttgacatcttcccctgtcacctccccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cgctgcctaaacaaatgatatcaatatcgggtttgacatcttcccctgtcacctccccct 384

                                                                       
Query: 185 gtcatcctgaagtcggagaatccatttatgcctctataaaaacgccaagcccctaaacgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcatcctgaagtcggagaatccatttatgcctctataaaaacgccaagcccctaaacgg 444

                              
Query: 245 gggggggggga-agggggg 262
           ||||||||||  |||||||
Sbjct: 445 ggggggggggggagggggg 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 665
Length adjustment: 9
Effective length of query: 255
Effective length of database: 656
Effective search space:   167280
Effective search space used:   167280
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)