BAC Information

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BAC

Clone NameMSMg01-340C03
Chromosome14 (Build37)
Map Location 115,062,235 - 115,261,570
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC382947, LOC668791, LOC100043821, LOC100043521
Downstream geneGpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340C03.T7 (MSMg01no340_c03.b1)MSMg01-340C03.TJ (MSMg01no340_c03.g1)
ACCAG454247AG454248
length725740
length of high quality
(start - end)		558 (44 - 601)638 (79 - 716)
definitionCHROMAT_FILE: MSMg01no340_c03.b1 PHD_FILE: MSMg01no340_c03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:06 2005CHROMAT_FILE: MSMg01no340_c03.g1 PHD_FILE: MSMg01no340_c03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:06 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,261,036 - 115,261,570)(115,062,235 - 115,062,872)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTATTTATTTACTATTTTAAACTCTTGGTGTATGTTTGTATCTGTG
TGAGTGCACGCACGTGAGTGTTGGTAATTTCAGAAGCCAGAAATGAGAGT
GAGCTTCCCTAGAGCTGGAGGTACAGGTGGTTGTGAGCTGCTCATCGATG
CTGGGAATCAAACTCAGGTTCTGTAAGTGCAAAGAATATCGCCGAGCTAT
TTCTTCAGCCCCTTAGTTAGCATTTATGCCTATGCATGATTGAGAATATA
CGTAGGTGACTAAGATTATGTACATTATAGTAAGAATAATGCTCAGTAGA
AAGATTCAACTTAATTTATCAGCCAACACAAAACCTCTCTCGCTATGCTT
CCATTAGCAAACTCCTCTTCCCCTTCCTGAGTTCTGTAGAAGCCTCAAAT
AAATTATCTCTACCCATGCTCTTTAACAGTGTATTCTGATCTGTCCTTTT
CTTTTAATTAGTATTCTTGCCACTTTTGAAAATCTTTGTGGGCCTTTATT
TCAAGTTGTTGAATAAAGGGATGAAAACTTGGAAATACCAGGCCCTGACC
CTGGCCACTGGTAACAATGATAGATANTGATAAAATTTTTAAAGTCCATG
AAGACAGCAGTGTGCATGATAGCTTAAAAATTCTAAAGTAATCTTACTGT
NAATATTTTCAGGCTATTCAGGGTA

NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGACAAATGGAGATTCCCT
AAGGATACTTATAAGAACAGCCAAGTTACTCTCATATGCAAGAATTTACA
AAGGCCTAGGAAAAAGGGGAGGGTGTGGTATTGCATTATTCATGATAAGG
TCTGCTAGAGCAGAACCCCCTGGTGCAAGCTTTCACAAGGCTCAAATGAG
TGGCACAAATTGTGACTAGGGTATGAAATCCTTACCTGTCATTAGCTGAC
CCTAGGCAGGGTGGTTTTATCTTTACTGTAAACATTACCTGGTTCCTGTA
AGTCCTTTGAAGGCATTCCTCTGTTTTGTGTCAGATACTTCAATGTACCT
TGGCTACTGTGACACCCTACTTTGTTTCCTGTATTAAATAAGACTGGTGT
TCACTTTGTGAAAAATTACTTCCAGATACAGCACTCCCTCGTGTCTGTGT
CCATTTGTCACTTCTCGCCAACTCCATGCCCACCTGTCTGGAACCTTGAT
TCCCCACAGATTGAGAGAGAACGACTGGGGCTGGTCTGTGGCACATGTTT
ATTTGACAAATACATATATAGAAATGTTTAAGGTAAGGTAATTAACTACT
CTAGTTTGGTTTCTGTTATTTCAATAAACACTATGATCAAGAGCAATCAG
GTTTTATTCTTCTTATAGATTACNATCCATTGTCCTATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_c03.b1 MSMg01no340_c03.b1 CHROMAT_FILE:
MSMg01no340_c03.b1 PHD_FILE: MSMg01no340_c03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:06 2005
         (558 letters)



>mm_chr14_115260617_115261574
          Length = 958

 Score =  957 bits (495), Expect = 0.0
 Identities = 525/535 (98%)
 Strand = Plus / Minus

                                                                       
Query: 24  tattttaaactcttggtgtatgtttgtatctgtgtgagtgcacgcacgtgagtgttggta 83
           ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 954 tattttaaactattggtgtatgtttgtgtctgtgtgagtgcacgcacgtgagtgttggta 895

                                                                       
Query: 84  atttcagaagccagaaatgagagtgagcttccctagagctggaggtacaggtggttgtga 143
           ||||||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 894 atttcagaagccagagatgagagtgagctttcctggagctggaggtacaggtggttgtga 835

                                                                       
Query: 144 gctgctcatcgatgctgggaatcaaactcaggttctgtaagtgcaaagaatatcgccgag 203
           ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 834 gcttctcatcgatgctgggaatcaaactcaggttctgtaagtgcaaagagtatcgccgag 775

                                                                       
Query: 204 ctatttcttcagccccttagttagcatttatgcctatgcatgattgagaatatacgtagg 263
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ccatttcttcagccccttagttagcatttatgcctatgcatgattgagaatatacgtagg 715

                                                                       
Query: 264 tgactaagattatgtacattatagtaagaataatgctcagtagaaagattcaacttaatt 323
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tgactaagattatgtacattatagtaagaataatgctcagtagaaagattcaacttaatt 655

                                                                       
Query: 324 tatcagccaacacaaaacctctctcgctatgcttccattagcaaactcctcttccccttc 383
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 654 tatcagccaacacaaaacctctctcactatgcttccattagcaaactcctcttccccttc 595

                                                                       
Query: 384 ctgagttctgtagaagcctcaaataaattatctctacccatgctctttaacagtgtattc 443
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 594 ctgagttctgtagaagcctcaaataaattatctctacccatgctcttcaacagtgtattc 535

                                                                       
Query: 444 tgatctgtccttttcttttaattagtattcttgccacttttgaaaatctttgtgggcctt 503
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgatctgtccttttcttttaattagtattcttgccacttttgaaaatctttgtgggcctt 475

                                                                  
Query: 504 tatttcaagttgttgaataaagggatgaaaacttggaaataccaggccctgaccc 558
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 tatttcaagttgttgaataaagggatgaaaacttggaaataccaggccctgaccc 420


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_c03.g1 MSMg01no340_c03.g1 CHROMAT_FILE:
MSMg01no340_c03.g1 PHD_FILE: MSMg01no340_c03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:06 2005
         (638 letters)



>mm_chr14_115062035_115063072
          Length = 1038

 Score = 1187 bits (614), Expect = 0.0
 Identities = 632/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgacaaatggagattccctaaggatacttataagaacagccaagttactctcatatg 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgacaaatggagattccctacggatacttataagaacagccaagttactctcatatg 260

                                                                       
Query: 61  caagaatttacaaaggcctaggaaaaaggggagggtgtggtattgcattattcatgataa 120
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 261 caagaatttaccaaggcctaggaaaaaggggaggttgtggtattgcattattcatgataa 320

                                                                       
Query: 121 ggtctgctagagcagaaccccctggtgcaagctttcacaaggctcaaatgagtggcacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtctgctagagcagaaccccctggtgcaagctttcacaaggctcaaatgagtggcacaa 380

                                                                       
Query: 181 attgtgactagggtatgaaatccttacctgtcattagctgaccctaggcagggtggtttt 240
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgtgactagggtgtgaaatccttacctgtcattagctgaccctaggcagggtggtttt 440

                                                                       
Query: 241 atctttactgtaaacattacctggttcctgtaagtcctttgaaggcattcctctgttttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctttactgtaaacattacctggttcctgtaagtcctttgaaggcattcctctgttttg 500

                                                                       
Query: 301 tgtcagatacttcaatgtaccttggctactgtgacaccctactttgtttcctgtattaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgtcagatacttcaatgtaccttggctactgtgacaccctactttgtttcctgtattaaa 560

                                                                       
Query: 361 taagactggtgttcactttgtgaaaaattacttccagatacagcactccctcgtgtctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taagactggtgttcactttgtgaaaaattacttccagatacagcactccctcgtgtctgt 620

                                                                       
Query: 421 gtccatttgtcacttctcgccaactccatgcccacctgtctggaaccttgattccccaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtccatttgtcacttctcgccaactccatgcccacctgtctggaaccttgattccccaca 680

                                                                       
Query: 481 gattgagagagaacgactggggctggtctgtggcacatgtttatttgacaaatacatata 540
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gattgagagagaccaactggggctggtctgtggcacatgtttatttgacaaatacatata 740

                                                                       
Query: 541 tagaaatgtttaaggtaaggtaattaactactctagtttggtttctgttatttcaataaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tagaaatgtttaaggtaaggtaattaactactctagtttggtttctgttatttcaataaa 800

                                                 
Query: 601 cactatgatcaagagcaatcaggttttattcttcttat 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 cactatgatcaagagcaatcaggttttattcttcttat 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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