BAC Information

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BAC

Clone NameMSMg01-340E04
Chromosome14 (Build37)
Map Location 87,404,694 - 87,585,262
singlet/doubletdoublet
Overlap geneDiap3
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
Downstream geneEG665324, Tdrd3, LOC100043317, LOC100043780
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340E04.T7 (MSMg01no340_e04.b1)MSMg01-340E04.TJ (MSMg01no340_e04.g1)
ACCAG454343AG454344
length740735
length of high quality
(start - end)		662 (47 - 708)603 (74 - 676)
definitionCHROMAT_FILE: MSMg01no340_e04.b1 PHD_FILE: MSMg01no340_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:15 2005CHROMAT_FILE: MSMg01no340_e04.g1 PHD_FILE: MSMg01no340_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,404,694 - 87,405,351)(87,584,660 - 87,585,262)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGGCTACTATCCATGAGTTTAAGTTAAAGAACAGAAATACTCT
CCCTCTAAAAAGACACCCACCATCAATCCTACATGGCTACGGAGATAAGC
AGTGGTCGATGGTGACTGTGTCCCCACAGCAGAGAGAATGTGAGTGGTGG
AGAAGACAAACCACAAAAGCCCCTTGCTAATGGGCACACGATTCAAACCC
CACCCGCCTGAAGAAAACGAAGTCTTTTTTATTGCCTCAGTATTTTAAAA
TGATACACTTAAAAAATATTTTAGCTACATTTAATGTGACAAAAGAAATT
CATTTCCTTTGAAATGTAAATGAAGAACATATCTAATAAAAAATTGAAAG
AAAGAAAATATCTAATAAAAGAAAGAAAAAAAAAGAAAAAAAGAAATTCA
TTTCCATAGAATATTGCAGTTGTCCCTATCAATGCTATACTTAATTGTTG
ATACCAAATAACTTAAAGATTGTATTTCCAGCAAAGATTTCACAGTGACA
ATTAACAAAGTGTGCACCTGCATAGCCAATTCAGTGACGTGTAGGAGAGC
TAACTGGGGCCTAAGGCTAATAATCCGACCCACAATACTACGTATGAGAA
TCTACACATCANAACAGTAAGCCCACGTGTCAGGAACTGAACTCTGTGCC
CTTGTTAGCCTAAGTGCCACTATCAAATTCAAATGCAGTA

CAATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTACATCTTCATTCAAAGGAGGCCAGGA
GCTGATTGTCTCCCACCTGGCTAGGAAGAGGGTCTTAAAGTCTACCCCAA
AATGACATGCTTATTCCAATAAGGCCACACCTACTCCAACAAGGACATAC
CCCCTTATACTGCCATTCTGTTGACCAAACATATTCAAACCACCACACCA
TAAAAGGAAAAAAGTATTCCTCCAAATGTCTTATCATTTAGTTACTGAGA
AAGAATCATACATAAATAGTAATATGAACATGTTAAGACATGTTTCTATA
CATAAATACATGTAAACTCAATAAAACCATTCAACTAAGATAACAGCATA
GATCATGTTTCTTTCCTGTAGCCATAGACATCTTTCCATATCACTATATA
TGTGTATTTCATGAAATGGATTCAAAATATTTAATGAATTCCAATTTTCT
AAAATCGTGTTTAATTTACTCTAAAGAACTACAGCCATTAAGAAAGACAG
TTTGGCTGATTCCTGGGTGTCTTGGTCACTTTCATGCTTTCTTGATTTCT
CCTGAGTTCATCCAGCCTCATTACTTCCTGACATTTCCCTTTCCCTTTCC
TTCTCCTCCCCGGAGATGATTTCTAGTAAGTGGACAGTGACTAGGAACAG
CAAGAATAGTGGATGGGTGAGAAGATCTGAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_e04.b1 MSMg01no340_e04.b1 CHROMAT_FILE:
MSMg01no340_e04.b1 PHD_FILE: MSMg01no340_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:15 2005
         (662 letters)



>mm_chr14_87404490_87405551
          Length = 1062

 Score = 1243 bits (643), Expect = 0.0
 Identities = 654/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaggctactatccatgagtttaagttaaagaacagaaatactctccctctaaaa 64
           ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaggctactaaagatgagtttaagttaaagaacagaaatactctccctctaaaa 264

                                                                       
Query: 65  agacacccaccatcaatcctacatggctacggagataagcagtggtcgatggtgactgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agacacccaccatcaatcctacatggctacggagataagcagtggtcgatggtgactgtg 324

                                                                       
Query: 125 tccccacagcagagagaatgtgagtggtggagaagacaaaccacaaaagccccttgctaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tccccacagcagagagaatgtgagtggtggagaagacaaaccacaaaagccccttgctaa 384

                                                                       
Query: 185 tgggcacacgattcaaaccccacccgcctgaagaaaacgaagtcttttttattgcctcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgggcacacgattcaaaccccacccgcctgaagaaaacgaagtcttttttattgcctcag 444

                                                                       
Query: 245 tattttaaaatgatacacttaaaaaatattttagctacatttaatgtgacaaaagaaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tattttaaaatgatacacttaaaaaatattttagctacatttaatgtgacaaaagaaatt 504

                                                                       
Query: 305 catttcctttgaaatgtaaatgaagaacatatctaataaaaaattgaaagaaagaaaata 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 catttcctttgaaatgtaaatgaagaacatatctaataaaaaattgaaagaaagaaaata 564

                                                                       
Query: 365 tctaataaaagaaagaaaaaaaaagaaaaaaagaaattcatttccatagaatattgcagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctaataaaagaaagaaaaaaaaagaaaaaaagaaattcatttccatagaatattgcagt 624

                                                                       
Query: 425 tgtccctatcaatgctatacttaattgttgataccaaataacttaaagattgtatttcca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgtccctatcaatgctatacttaattgttgataccaaataacttaaagattgtatttcca 684

                                                                       
Query: 485 gcaaagatttcacagtgacaattaacaaagtgtgcacctgcatagccaattcagtgacgt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gcaaagatttcacagtgacaattaacaaagtgtgcacctgcatagccaattcagtgacgt 744

                                                                       
Query: 545 gtaggagagctaactggggcctaaggctaataatccgacccacaatactacgtatgagaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gtaggagagctaactggggcctaaggctaataatccgacccacaatactacgtatgagaa 804

                                                                     
Query: 605 tctacacatcanaacagtaagcccacgtgtcaggaactgaactctgtgcccttgttag 662
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 tctacacatcaaaacagtaagcccacgtgtcaggaactgaactctgtgcccttgttag 862


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 662
Length of database: 1062
Length adjustment: 10
Effective length of query: 652
Effective length of database: 1052
Effective search space:   685904
Effective search space used:   685904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_e04.g1 MSMg01no340_e04.g1 CHROMAT_FILE:
MSMg01no340_e04.g1 PHD_FILE: MSMg01no340_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:15 2005
         (603 letters)



>mm_chr14_87584286_87585288
          Length = 1003

 Score = 1166 bits (603), Expect = 0.0
 Identities = 603/603 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacatcttcattcaaaggaggccaggagctgattgtctcccacctggctaggaagagggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 tacatcttcattcaaaggaggccaggagctgattgtctcccacctggctaggaagagggt 918

                                                                       
Query: 61  cttaaagtctaccccaaaatgacatgcttattccaataaggccacacctactccaacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 cttaaagtctaccccaaaatgacatgcttattccaataaggccacacctactccaacaag 858

                                                                       
Query: 121 gacatacccccttatactgccattctgttgaccaaacatattcaaaccaccacaccataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 gacatacccccttatactgccattctgttgaccaaacatattcaaaccaccacaccataa 798

                                                                       
Query: 181 aaggaaaaaagtattcctccaaatgtcttatcatttagttactgagaaagaatcatacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aaggaaaaaagtattcctccaaatgtcttatcatttagttactgagaaagaatcatacat 738

                                                                       
Query: 241 aaatagtaatatgaacatgttaagacatgtttctatacataaatacatgtaaactcaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aaatagtaatatgaacatgttaagacatgtttctatacataaatacatgtaaactcaata 678

                                                                       
Query: 301 aaaccattcaactaagataacagcatagatcatgtttctttcctgtagccatagacatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aaaccattcaactaagataacagcatagatcatgtttctttcctgtagccatagacatct 618

                                                                       
Query: 361 ttccatatcactatatatgtgtatttcatgaaatggattcaaaatatttaatgaattcca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ttccatatcactatatatgtgtatttcatgaaatggattcaaaatatttaatgaattcca 558

                                                                       
Query: 421 attttctaaaatcgtgtttaatttactctaaagaactacagccattaagaaagacagttt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 attttctaaaatcgtgtttaatttactctaaagaactacagccattaagaaagacagttt 498

                                                                       
Query: 481 ggctgattcctgggtgtcttggtcactttcatgctttcttgatttctcctgagttcatcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 ggctgattcctgggtgtcttggtcactttcatgctttcttgatttctcctgagttcatcc 438

                                                                       
Query: 541 agcctcattacttcctgacatttccctttccctttccttctcctccccggagatgatttc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agcctcattacttcctgacatttccctttccctttccttctcctccccggagatgatttc 378

              
Query: 601 tag 603
           |||
Sbjct: 377 tag 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space:   588849
Effective search space used:   588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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