BAC Information

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BAC

Clone NameMSMg01-340L23
Chromosome14 (Build37)
Map Location 94,882,817 - 94,883,337
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC100043356
Downstream geneLOC100043783, LOC677613, LOC100043784, LOC382931
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340L23.T7 (MSMg01no340_l23.b1)MSMg01-340L23.TJ (MSMg01no340_l23.g1)
ACCAG454710AG454711
length871748
length of high quality
(start - end)
---521 (80 - 600)
definitionCHROMAT_FILE: MSMg01no340_l23.b1 PHD_FILE: MSMg01no340_l23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:49 2005CHROMAT_FILE: MSMg01no340_l23.g1 PHD_FILE: MSMg01no340_l23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTTTACCACATTTTGTGGGCGCTTATATAACTCTCTATATGTCTTCCAAC
ATGCCGCGATTTTCTGGNTCATTTCTGCCGCCCTCATATCCCTGGTTAAA
CTATAGAATTACGAAAACTTTAAGTGGGTGCTTCAATCCCCTTCACTGGG
ACAGCATCGTCTGTGCATTTCACAGAACCNAATGCTTTTATCTGCGTTCA
GGCAATTGGGTGTTGAGAAGCATACTAATGAATNTAATCANNCATCCTAT
TAAAAGAACTAACTCAATGTAGGATTGCCGGCAATGGCCACCACCCTTTA
GAAAAAATTTAGTAATAATAAAGTTCGTTNTNGAAGNTTAGGTTGAGATT
NTTNTNACCACTTGTTTTCTGATGCAANNAATTATCNCCGNNTTGANCTT
GCNAATCCAGAAATAGGATAACCGTTATTTAATGTAAGNTTAGNTGAACT
TCTNAATGTGTCCTGTGTATCTATAAGCCAGTTGCGCTNCTCTAATTCAC
CNTTNTGTCNNCTCANTTGAATACTTGGTACGCGCNTGAATAAAGTGATC
NTTNCTTTTTTTCTTTGNNTCTTCCGGAAACTGCACATNCTNTGTCTCCC
GCCCCCGGTCATTCTTTACATCGATACTCTAGTTCCCCTCTTCACTATAT
CTCCATAACTCTCTTGNTTCGTTACTTCTTTGCGCGTCCTATACTTATCC
TTCTTTTTCCATTCATATGAGATCACTTTGTTACTATTCACCTACCGTGT
CCTCTTCTTTTACATCATTCGTCTCATTATTTTCGTTATTTCTATTCCTC
TCTCTATTACTCCCCACTCTTTTCCGCCCTCATACCTTTATCACTCGCCC
CATTTTCTTCTTTCCTCCTTC
NNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGCCAAGTGAGACAGG
AAGGACTCAGATAAGATACATCTGTCAAGAGCATGCCTACAGACTGCTAC
ATCCTCCAAGCCCCAGTTCTTCATGTCCCCACCACTCCATCACTTCCTCT
GGTATTGGCTTTTCCAAAAGACCTGAAAGAAACAAAACTTGGCACATGGT
GTAAGAGGTAGTTCACTTGTCAAAGGTTATAAGATGTGGGAGTTGTTGCA
GCACGATTGGTACTGTTAAAATTGATACTGATGGAATATGAGGAAGATGA
TTCCTTTCTCTGTGGCACACCAGGATGCACAGAAGAGAAACCCCATTCAG
CATGTATATAATCTTGGGTCTCCCTAAGTGGCTTATTTCCAACAGCCAGT
CCTCACCTTGTAAAATTTTCACAAACTTCACAATAACACATGTTTGCAAC
TGAGGATTCAAACCATAAGTGAACAGATTACATTTGTTTATTTAATTCAT
GGAAAGAACTTTCAGTGATTCATGCTGACATGAAGTATTTAACATAACAT
AATCCTAACAATATTAAGNAATATTTATTTATTATAATTATTCCCTGTTG
NAAATTCTAAGGGGAAATCACNAAAACACCAATTAATGTGGTGTTAGAGC
TAGAAAAAGAGATCACTGTGAATCCCAGCCTTTTTTTTTTTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_l23.g1 MSMg01no340_l23.g1 CHROMAT_FILE:
MSMg01no340_l23.g1 PHD_FILE: MSMg01no340_l23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:49 2005
         (521 letters)



>mm_chr14_94882617_94883537
          Length = 921

 Score = 1007 bits (521), Expect = 0.0
 Identities = 521/521 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagaaagccaagtgagacaggaaggactcagataagatacatctgtcaagagcatgccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaaagccaagtgagacaggaaggactcagataagatacatctgtcaagagcatgccta 260

                                                                       
Query: 61  cagactgctacatcctccaagccccagttcttcatgtccccaccactccatcacttcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagactgctacatcctccaagccccagttcttcatgtccccaccactccatcacttcctc 320

                                                                       
Query: 121 tggtattggcttttccaaaagacctgaaagaaacaaaacttggcacatggtgtaagaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tggtattggcttttccaaaagacctgaaagaaacaaaacttggcacatggtgtaagaggt 380

                                                                       
Query: 181 agttcacttgtcaaaggttataagatgtgggagttgttgcagcacgattggtactgttaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttcacttgtcaaaggttataagatgtgggagttgttgcagcacgattggtactgttaa 440

                                                                       
Query: 241 aattgatactgatggaatatgaggaagatgattcctttctctgtggcacaccaggatgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattgatactgatggaatatgaggaagatgattcctttctctgtggcacaccaggatgca 500

                                                                       
Query: 301 cagaagagaaaccccattcagcatgtatataatcttgggtctccctaagtggcttatttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaagagaaaccccattcagcatgtatataatcttgggtctccctaagtggcttatttc 560

                                                                       
Query: 361 caacagccagtcctcaccttgtaaaattttcacaaacttcacaataacacatgtttgcaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caacagccagtcctcaccttgtaaaattttcacaaacttcacaataacacatgtttgcaa 620

                                                                       
Query: 421 ctgaggattcaaaccataagtgaacagattacatttgtttatttaattcatggaaagaac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgaggattcaaaccataagtgaacagattacatttgtttatttaattcatggaaagaac 680

                                                    
Query: 481 tttcagtgattcatgctgacatgaagtatttaacataacat 521
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttcagtgattcatgctgacatgaagtatttaacataacat 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)