BAC Information

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BAC

Clone NameMSMg01-340O01
Chromosome14 (Build37)
Map Location 47,938,579 - 48,122,525
singlet/doubletdoublet
Overlap geneC130032J12Rik, Lgals3, Dlg7, LOC666895, Fbxo34
Upstream geneLOC100041724, Bmp4, LOC100041732, LOC100041754, Cdkn3, Cnih, Gmfb, Cgrrf1, Samd4, Gch1, Wdhd1, Socs4, LOC670795
Downstream geneD14Ertd436e, EG625730, LOC100042787, Ktn1, 4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340O01.T7 (MSMg01no340_o01.b1)MSMg01-340O01.TJ (MSMg01no340_o01.g1)
ACCAG454810AG454811
length734735
length of high quality
(start - end)		547 (44 - 590)596 (76 - 671)
definitionCHROMAT_FILE: MSMg01no340_o01.b1 PHD_FILE: MSMg01no340_o01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:59 2005CHROMAT_FILE: MSMg01no340_o01.g1 PHD_FILE: MSMg01no340_o01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:29:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,122,152 - 48,122,525)(47,938,579 - 47,939,174)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGGATCCGCGGAA
TTCAATCACAGATTACAAAAAAAAAAAAGTAAGACACCTCCAAACGAAAT
CTGGCAGGTTACCCAACAGTGGAACTTAACATTAGCTGTTAAGTCCTATT
TGCATATTTAGAGCTTTCCTATCCAATTCCACCATGAAACAAGAAATCAA
GAATTTAGACATCTCTAAACCGGTTGTGGTGGCACACGCCTTTAATCCCA
GCACTCAGAAGGCAGAGGCAGGTAGATTTCTGAGTTCGAGGCCAGCCTGG
TCTACAGAGTGAGTTCCAGGACAGCAGGGCTACACAGAGAAACCCTGTCT
CAAAAAAAAAAAAAAAAAAAGAGTTTAGATGTCTCCAGAATAAAGATAAA
ATAAGGAGACAAGGGAAGTGGGGCAGGACTCTAATGTGAGCACTTGGGAG
GCAGAGGCAGGAGGGTCTTAGATCATCACCAGCCTCTGCAGCACAACAGC
CACCATGGAAGGAAAAGAAGGCAAGATGGGAGGGAGATCTACCAGAAGAG
TCGAGCACAAGAATCTCATGACCGCAAATGTAACAAGAGTGGAGGGAAAG
GAGAGAAAGAAACTACATCCTCAATAGTAAAAATAAAAACACTGTATGAT
ATGTTCAGAAAATCCAGTGACCTGGGTTCCAAAAAAACTAAGAGAAACTG
AAAAAAAGAATGGAAGCCACCAACTAAATGATTA

CATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGCAGGCAATCTGATAGTTAGGAC
TGCAGTACTTGCGCTCCTCCTTTTTAAAGAAAATGATGTAAATGAGGTGG
CTTAAAGTCTCACACAATCGCCAAATTTAATCGGAGCATCAGATAGTTTA
TACTCTGGCGTTTAAGAAGATTTATGTAAATGTACAATTATAAGCCTCAC
GTGGTGGAGCAAGCTGAAGGCAGCAAAAAACATTTTCCATAGAGGCATAT
AAAGAAATAACAATAGCCAGTTGTAATGAATAATCTGAAGTGAACTATCT
GCTACATCTGGGAGGGGCACAAAAGCAGAATGTAAGAACAATTCCCTGTG
TTTTGAAGAAACAGGTCACAAGACTCCTGTCTCGGTTTCTTGGAGTTTTC
TTACAGGCACTCAGAAATCTCACATGATTCTAATTTTGAGCCCTGTTCTG
ACCGTTACTCTGCTGCTTCTGGTATTCACAGAGACCCACAATTATAGAAG
TTGATTTTTTTTTCCCTTTTTTTTCTGTTGCAGTCTTACCATTAAGTTGA
CAGTGGATGAAGAGATGGCGCAATGCTTTTTGAAGTACATGTGTATGCAC
GAGAAAGCATATATAATGGCTGGTTTCGCTGTTGGTTGAGGGCATTTGTG
AAAGAACTTTGCACCTCATTTCCTGCTTCATGGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_o01.b1 MSMg01no340_o01.b1 CHROMAT_FILE:
MSMg01no340_o01.b1 PHD_FILE: MSMg01no340_o01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:59 2005
         (547 letters)



>mm_chr14_48122152_48123098
          Length = 947

 Score =  700 bits (362), Expect = 0.0
 Identities = 371/374 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaatcacagattacaaaaaaaaaaaagtaagacacctccaaacgaaatctggca 63
           ||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ggaattcaatcacagaaaaaaaaaaaaaaaaagtaagacacctccaaacgaaatctggca 315

                                                                       
Query: 64  ggttacccaacagtggaacttaacattagctgttaagtcctatttgcatatttagagctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ggttacccaacagtggaacttaacattagctgttaagtcctatttgcatatttagagctt 255

                                                                       
Query: 124 tcctatccaattccaccatgaaacaagaaatcaagaatttagacatctctaaaccggttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tcctatccaattccaccatgaaacaagaaatcaagaatttagacatctctaaaccggttg 195

                                                                       
Query: 184 tggtggcacacgcctttaatcccagcactcagaaggcagaggcaggtagatttctgagtt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 tggtggcacacgcctttaatcccagcactcagaaggcagaggcaggtagatttctgagtt 135

                                                                       
Query: 244 cgaggccagcctggtctacagagtgagttccaggacagcagggctacacagagaaaccct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 cgaggccagcctggtctacagagtgagttccaggacagcagggctacacagagaaaccct 75

                                                                       
Query: 304 gtctcaaaaaaaaaaaaaaaaaaagagtttagatgtctccagaataaagataaaataagg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  gtctcaaaaaaaaaaaaaaaaaaagagtttagatgtctccagaataaagataaaataagg 15

                         
Query: 364 agacaagggaagtg 377
           ||||||||||||||
Sbjct: 14  agacaagggaagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_o01.g1 MSMg01no340_o01.g1 CHROMAT_FILE:
MSMg01no340_o01.g1 PHD_FILE: MSMg01no340_o01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:59 2005
         (596 letters)



>mm_chr14_47938379_47939374
          Length = 996

 Score = 1152 bits (596), Expect = 0.0
 Identities = 596/596 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcaggcaatctgatagttaggactgcagtacttgcgctcctcctttttaaagaaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcaggcaatctgatagttaggactgcagtacttgcgctcctcctttttaaagaaaatg 260

                                                                       
Query: 61  atgtaaatgaggtggcttaaagtctcacacaatcgccaaatttaatcggagcatcagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtaaatgaggtggcttaaagtctcacacaatcgccaaatttaatcggagcatcagata 320

                                                                       
Query: 121 gtttatactctggcgtttaagaagatttatgtaaatgtacaattataagcctcacgtggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtttatactctggcgtttaagaagatttatgtaaatgtacaattataagcctcacgtggt 380

                                                                       
Query: 181 ggagcaagctgaaggcagcaaaaaacattttccatagaggcatataaagaaataacaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggagcaagctgaaggcagcaaaaaacattttccatagaggcatataaagaaataacaata 440

                                                                       
Query: 241 gccagttgtaatgaataatctgaagtgaactatctgctacatctgggaggggcacaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccagttgtaatgaataatctgaagtgaactatctgctacatctgggaggggcacaaaag 500

                                                                       
Query: 301 cagaatgtaagaacaattccctgtgttttgaagaaacaggtcacaagactcctgtctcgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagaatgtaagaacaattccctgtgttttgaagaaacaggtcacaagactcctgtctcgg 560

                                                                       
Query: 361 tttcttggagttttcttacaggcactcagaaatctcacatgattctaattttgagccctg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttcttggagttttcttacaggcactcagaaatctcacatgattctaattttgagccctg 620

                                                                       
Query: 421 ttctgaccgttactctgctgcttctggtattcacagagacccacaattatagaagttgat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttctgaccgttactctgctgcttctggtattcacagagacccacaattatagaagttgat 680

                                                                       
Query: 481 ttttttttcccttttttttctgttgcagtcttaccattaagttgacagtggatgaagaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttttttttcccttttttttctgttgcagtcttaccattaagttgacagtggatgaagaga 740

                                                                   
Query: 541 tggcgcaatgctttttgaagtacatgtgtatgcacgagaaagcatatataatggct 596
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tggcgcaatgctttttgaagtacatgtgtatgcacgagaaagcatatataatggct 796


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 996
Length adjustment: 10
Effective length of query: 586
Effective length of database: 986
Effective search space:   577796
Effective search space used:   577796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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