Query= MSMg01no340_o03.b1 MSMg01no340_o03.b1 CHROMAT_FILE:
MSMg01no340_o03.b1 PHD_FILE: MSMg01no340_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:59 2005
(533 letters)
>mm_chr14_15375242_15376173
Length = 932
Score = 957 bits (495), Expect = 0.0
Identities = 519/527 (98%), Gaps = 3/527 (0%)
Strand = Plus / Plus
Query: 8 ttctactcactg-tcgcacaaagcattcaagccaccacaccccttatgagctgttggcct 66
|||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctactcactggt-g-acaaagcattcaagccaccacaccccttatgagctgttggccc 265
Query: 67 gggaagaccaaggatctccaaagtcacttgtggatatggccagaaaacccttggttaaac 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 gggaagaccaaggatctccaaagtcacttgtggatatggccagaaaacccttggttaaac 325
Query: 127 tttttaaaagaagaggaagcttgaaaaacaaatgattctgaaatttttataaacaataat 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tttttaaaagaagaggaagcttgaaaaacaaatgattctgaaatttttataaacaataat 385
Query: 187 aaggggatagatacacatgtgtatcataaaataatttctaggtaagaaggattttagttt 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 aaggggatagatacacatgtgtatcataaaataatttctaggtaagaaggattttagttt 445
Query: 247 atatttaaaaatagtagcagtggcaatcccatcaacaagataccaatgacctacatgtgt 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 atatttaaaaatagtagcagtggcaatcccatcaacaagataccaatgacctacatgtgt 505
Query: 307 taatcccacttttgcacacatctgcttttttttttgcagatacaccatctcatgcaacat 366
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 506 taatcccacttttgcacacatctgctttttttttcccagacacaccatctcatgcaacat 565
Query: 367 atactggttgtgaactagtttagaagttggccttagacttcttgttctcacccctctacc 426
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 566 atactggttgtgaactagtttagaagttggccttagacttcttgttctcatccctctacc 625
Query: 427 taccaagttttgggattataggcatgcactgccatgcttagctaatgtttgcatttttaa 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taccaagttttgggattataggcatgcactgccatgcttagctaatgtttgcatttttaa 685
Query: 487 tataataacatatgtgtatgtccctagtgggaatataacatattgga 533
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 tataataacatatgtgtatgtccctagtgggaatataacatattgga 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 932
Length adjustment: 10
Effective length of query: 523
Effective length of database: 922
Effective search space: 482206
Effective search space used: 482206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_o03.g1 MSMg01no340_o03.g1 CHROMAT_FILE:
MSMg01no340_o03.g1 PHD_FILE: MSMg01no340_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:29:59 2005
(538 letters)
>mm_chr14_15504309_15505246
Length = 938
Score = 994 bits (514), Expect = 0.0
Identities = 532/538 (98%)
Strand = Plus / Minus
Query: 1 tttttaaggttctctgtgaacaagcaggggcacagataataggccggccagttcagacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tttttaaggttctctgtgaacaagcaggggcacagataataggccggccagttcagacac 679
Query: 61 ctgaatcgtaagaaagtctgagttaattacagcaagcattttctcccttcacactgaggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ctgaatcgtaagaaagtctgagttaattacagcaagcattttctcccttcacactgaggc 619
Query: 121 ccacagccatctgactgtgaaggaggccaaggtgtgccttcccaggaggaacctctgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ccacagccatctgactgtgaaggaggccaaggtgtgccttcccaggaggaacctctgaaa 559
Query: 181 ccagcctcctcacttgcaaacacattagtcttagcagttaaaactctgaatgcagaaagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccagcctcctcacttgcaaacacattagtcttagcagttaaaactctgaatgcagaaagg 499
Query: 241 gcatgtgagataccaaagtgtggtcactgggctgagcttgttttccatagagctttccag 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 498 gcatgtgagataccaaagtgtgatcactgggctgagcttgttttccatagagctttccag 439
Query: 301 gcacatgacatgggaatggtttggggggcacagtgcctttccaacacaatgatggggagt 360
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 438 gcacgtgacatgggaatggtttggggggcacagtgcctttccaacacaatgatggggact 379
Query: 361 aagtcctgcctgagggcacccaagctgaagaacatcccacttgacagtgaccctgcccca 420
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 378 aagtcctgcctgagggcacccaagctaaagagcatcccacttgacagtgaccctgcccca 319
Query: 421 ccagatgcttggttgaaggccatcacaaaagttcatgtaggggtagagcaaaacacagcc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 318 ccagatgcttggttgaaggccatcacaaaagttcatgtaggggtagagcaaaacacaacc 259
Query: 481 aagaaaattccctcgatgggcagttcttttattataaatcctttaactcaactaaatt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 aagaaaattccctcgatgggcagttcttttattataaatcctttaactcaactaaatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
