BAC Information

Click to search

BAC

Clone NameMSMg01-340O16
Chromosome14 (Build37)
Map Location 65,351,731 - 65,538,900
singlet/doubletdoublet
Overlap geneKif13b, Hmbox1
Upstream geneXkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Downstream geneLOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-340O16.T7 (MSMg01no340_o16.b1)MSMg01-340O16.TJ (MSMg01no340_o16.g1)
ACCAG454840AG454841
length716724
length of high quality
(start - end)		584 (51 - 634)534 (83 - 616)
definitionCHROMAT_FILE: MSMg01no340_o16.b1 PHD_FILE: MSMg01no340_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:01 2005CHROMAT_FILE: MSMg01no340_o16.g1 PHD_FILE: MSMg01no340_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,538,324 - 65,538,900)(65,351,731 - 65,352,264)
sequence
NNNNCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCACCGTGTTGCCAAAAAGCTGAACAGTAAAAAGAATTG
ATAAGTTTTATTTAATCAAACCCTTTCCCTCTAAAAGCATGATTGAATAA
CAATAGGGTCATATTACAAATGGATGTGTGTTGAGATAGGTATGATTTGT
AGCCTAATTTTGGGATGTGTCTTCAGTGGAGTGTGGAATGGCCGGTGCTG
AGAGCTTAACTCAGGGGCCTCTTGTACGCAGTTCTAACTCATGTTAGAAG
ACACTTGTGAACCGTACTGTTAAATTACTGAGGGGTTTTTAGTTTGTTTT
TAATGTCCTTTGAGCCCCAGTTTTCTTCTATTGAGAGATGAAAACACTAA
CATTACACCATGGGATCACCATGCTAGTCAAGTGAAGAATCAGACATTAA
TAGCATAAAAGTGTTATTGCTGTTAGTGTATTCTCATTAGCTACTGTCAT
TTATACCTGGCTGATGCTTCAGTTGCTCTTTTTCAGAAAACTAACTAGTT
ATATCTTAAGGAGAGTCTAAAATAATTTTTTCTCTTTTAATAGATAAATG
AATTAGAATTTAACCTGACTCTTGATGACTTGGGAATCAGAAGTAGGTGT
AGCCAAATTATTTTCATTCTCTCTTTAAGGAAATCCAGTCACACAATCTG
TCATGTGTGCACTCTN

NNNCTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAAAAGGCAGAGAAATG
TATAAAACTACAAAATTCTCTAAAAAATTTATATGTGTTAAAATTGGAAA
AACTATATTTTTAAAATTAAGAGTTTTCTAAAGGTGAACATTGGCCAAAT
CTAAGTCAGCTTTCTTGTTATGTAGTGAATATCTCTAAATTTTAAGACTT
TGTTGTTCATTGTGGTCGCATTTCTGAAAGGGGATATTGAATCTTTACGT
GTTCATGTATGTGGGTCTATGTACATGAGTGTGTGCATATGGAATCCAGA
GGACAACCTTAGGTTTTGTTCCTCAGGCTCTGTACACCTTTAAAAACATA
ATTTTAGAAGTTTTATTTGTATGTATATAATGTTGGCCTGTGTGAGTGTA
AATGCACCATGAGCATGTAGGAGCCGGCAAAGGGCATCAGAATCCCCGAC
ACTGGTGTTGTAAAGCACCTTTTGGGTACTGAGGACTGAACTCAGGTCCT
CTGTGAGAGCCGTAAGTACTCTGAACTGCTGAGCAACCTCTGTAGGCCCT
TCACTGTTTTTGAGACAGTCTCTCACATGGAGCTCATCTAGTAGGTCAAG
CTTGCCCGCAAGTTCTGGGGATCTAACTTTTCTCCTGGGGATTGTAGGAA
CTACAATCAAGTTTAACCTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no340_o16.b1 MSMg01no340_o16.b1 CHROMAT_FILE:
MSMg01no340_o16.b1 PHD_FILE: MSMg01no340_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:01 2005
         (584 letters)



>mm_chr14_65538117_65539100
          Length = 984

 Score = 1062 bits (549), Expect = 0.0
 Identities = 570/577 (98%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaccgtgttgccaaaaagctgaacagtaaaaagaattgataagttttatttaatc 67
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gaattcaccgtgaagccaaaaagctgaacagtaaaaagaattgataagttttatttaatc 725

                                                                       
Query: 68  aaaccctttccctctaaaagcatgattgaataacaatagggtcatattacaaatggatgt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaaccctttccctctaaaagcatgattgaataacaatagggtcatattacaaatggatgt 665

                                                                       
Query: 128 gtgttgagataggtatgatttgtagcctaattttgggatgtgtcttcagtggagtgtgga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gtgttgagataggtatgatttgtagcctaattttgggatgtgtcttcagtggagtgtgga 605

                                                                       
Query: 188 atggccggtgctgagagcttaactcaggggcctcttgtacgcagttctaactcatgttag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 atggccggtgctgagagcttaactcaggggcctcttgtacgcagttctaactcatgttag 545

                                                                       
Query: 248 aagacacttgtgaaccgtactgttaaattactgaggggtttttagtttgtttttaatgtc 307
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 aagacacttgtgaaccgtactgttaaattactgaggggtttttagtttgtttttaatgtc 485

                                                                       
Query: 308 ctttgagccccagttttcttctattgagagatgaaaacactaacattacaccatgggatc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 ctttgagccccagttttcttctattgagagatgaaaacactaacattacaccatgggatc 425

                                                                       
Query: 368 accatgctagtcaagtgaagaatcagacattaatagcataaaagtgttattgctgttagt 427
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 accatgctagttaagtgaagaatcagacattaatagcataaaagtgttattgctgttagt 365

                                                                       
Query: 428 gtattctcattagctactgtcatttatacctggctgatgcttcagttgctctttttcaga 487
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 364 gtattctcattagttactgtcatttatacctggttgatgcttcagttgctctttttcaga 305

                                                                       
Query: 488 aaactaactagttatatcttaaggagagtctaaaataattttttctcttttaatagataa 547
           |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 304 aaactaactagttatatcttaaggagtgtctaaaataatttttactcttttaatagataa 245

                                                
Query: 548 atgaattagaatttaacctgactcttgatgacttggg 584
           |||||||||||||||||||||||||||||||||||||
Sbjct: 244 atgaattagaatttaacctgactcttgatgacttggg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space:   559076
Effective search space used:   559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no340_o16.g1 MSMg01no340_o16.g1 CHROMAT_FILE:
MSMg01no340_o16.g1 PHD_FILE: MSMg01no340_o16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:02 2005
         (534 letters)



>mm_chr14_65351531_65352464
          Length = 934

 Score = 1033 bits (534), Expect = 0.0
 Identities = 534/534 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaaaggcagagaaatgtataaaactacaaaattctctaaaaaatttatatgtgttaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaaaggcagagaaatgtataaaactacaaaattctctaaaaaatttatatgtgttaaa 260

                                                                       
Query: 61  attggaaaaactatatttttaaaattaagagttttctaaaggtgaacattggccaaatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggaaaaactatatttttaaaattaagagttttctaaaggtgaacattggccaaatct 320

                                                                       
Query: 121 aagtcagctttcttgttatgtagtgaatatctctaaattttaagactttgttgttcattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagtcagctttcttgttatgtagtgaatatctctaaattttaagactttgttgttcattg 380

                                                                       
Query: 181 tggtcgcatttctgaaaggggatattgaatctttacgtgttcatgtatgtgggtctatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggtcgcatttctgaaaggggatattgaatctttacgtgttcatgtatgtgggtctatgt 440

                                                                       
Query: 241 acatgagtgtgtgcatatggaatccagaggacaaccttaggttttgttcctcaggctctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgagtgtgtgcatatggaatccagaggacaaccttaggttttgttcctcaggctctg 500

                                                                       
Query: 301 tacacctttaaaaacataattttagaagttttatttgtatgtatataatgttggcctgtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacacctttaaaaacataattttagaagttttatttgtatgtatataatgttggcctgtg 560

                                                                       
Query: 361 tgagtgtaaatgcaccatgagcatgtaggagccggcaaagggcatcagaatccccgacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagtgtaaatgcaccatgagcatgtaggagccggcaaagggcatcagaatccccgacac 620

                                                                       
Query: 421 tggtgttgtaaagcaccttttgggtactgaggactgaactcaggtcctctgtgagagccg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tggtgttgtaaagcaccttttgggtactgaggactgaactcaggtcctctgtgagagccg 680

                                                                 
Query: 481 taagtactctgaactgctgagcaacctctgtaggcccttcactgtttttgagac 534
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taagtactctgaactgctgagcaacctctgtaggcccttcactgtttttgagac 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |