Query= MSMg01no340_p16.b1 MSMg01no340_p16.b1 CHROMAT_FILE:
MSMg01no340_p16.b1 PHD_FILE: MSMg01no340_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:06 2005
(562 letters)
>mm_chr14_54458838_54459800
Length = 963
Score = 1011 bits (523), Expect = 0.0
Identities = 555/577 (96%), Gaps = 19/577 (3%)
Strand = Plus / Plus
Query: 5 gaattcattatacatactcatctttacacacacacacacacacacacacacacaca---- 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 gaattcattatacatactcatctttacacacacacacacacacacacacacacacacaca 246
Query: 61 --------------gcagtaaagtctatacagataaaactttagaaatacacttctaata 106
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cacacacacacacagcagtaaagtctatacagataaaactttagaaatacacttctaata 306
Query: 107 actcatctccaactcaaacaaatttcctaaatgaagatggttgtatcttctgtagtccgt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 actcatctccaactcaaacaaatttcctaaatgaagatggttgtatcttctgtagtccgt 366
Query: 167 ggttctacataaagagtgtcaaaatacaaaataaacaagactgaggccctggccttcagc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggttctacataaagagtgtcaaaatacaaaataaacaagactgaggccctggccttcagc 426
Query: 227 agttatttttttt-ctgtaggaacacaactgtcaacatgatctcagtaaacttcatgctg 285
|| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 427 agctatttttttttctgtaggaacacaactgtcaacatgatctcagtaagcttcatgctg 486
Query: 286 agtgaagagcttagtcttcccaatgctttataagtttaccttgggaatctttttcacctc 345
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 487 agtgaagagcttagtcttcccgatgctttataagtttaccttgggaatctttttcacctc 546
Query: 346 caaaaaaggagtctcctgaccctgtgtggtagtgtagctccaactcctataatgaacact 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 caaaaaaggagtctcctgaccctgtgtggtagtgtagctccaactcctataatgaacact 606
Query: 406 cagcaagaatgaaagtcctagctcattctaatcgtcctgtgatgctttaacatcattcta 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cagcaagaatgaaagtcctagctcattctaatcgtcctgtgatgctttaacatcattcta 666
Query: 466 agaatatattctgcactataaagatctccctactactgccacattcctaaaccaatgtaa 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 agaatatattctgcactataaagatctccctactactgccacattcctaaaccaatgtaa 726
Query: 526 ttccttactgaactataaatatttgcctatatactca 562
|||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttccttactgaactataaatatttgcctatatactca 763
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 562
Length of database: 963
Length adjustment: 10
Effective length of query: 552
Effective length of database: 953
Effective search space: 526056
Effective search space used: 526056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no340_p16.g1 MSMg01no340_p16.g1 CHROMAT_FILE:
MSMg01no340_p16.g1 PHD_FILE: MSMg01no340_p16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:06 2005
(609 letters)
>mm_chr14_54631942_54632950
Length = 1009
Score = 1178 bits (609), Expect = 0.0
Identities = 609/609 (100%)
Strand = Plus / Minus
Query: 1 agtgatgagaagtggaaagtggtttttaatgtgattgtgttattgatgaaagaaaaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 agtgatgagaagtggaaagtggtttttaatgtgattgtgttattgatgaaagaaaaaaac 618
Query: 61 ccttatctatacacactgccatcctatgggaacatttatttttatctctactcattatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ccttatctatacacactgccatcctatgggaacatttatttttatctctactcattatct 558
Query: 121 aaaccagacagggcattattaaatttcgacacaaaagaccctttaaaactggtcggcagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaaccagacagggcattattaaatttcgacacaaaagaccctttaaaactggtcggcagg 498
Query: 181 gataagaggctagagctggagcaacaaatgaattaaagaactaaggagcaagtggtccag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gataagaggctagagctggagcaacaaatgaattaaagaactaaggagcaagtggtccag 438
Query: 241 caacgacctctcccttgattctagatacactcgaaggggacctgttacctctagtctttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 caacgacctctcccttgattctagatacactcgaaggggacctgttacctctagtctttt 378
Query: 301 ggacatctcttttcctggccctggatatagtttctacaccacaaaaagcatgctattgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ggacatctcttttcctggccctggatatagtttctacaccacaaaaagcatgctattgta 318
Query: 361 tatttgttgacacccactttagaattctggggttttctctgtgcagttattccgtctggc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tatttgttgacacccactttagaattctggggttttctctgtgcagttattccgtctggc 258
Query: 421 atatttgatatatgagctaggttttgtttgtttgtttgtttttgttttgttcttgtttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 atatttgatatatgagctaggttttgtttgtttgtttgtttttgttttgttcttgtttgt 198
Query: 481 caacttggcacaagttagagtagtttgagaggggagaagctcaattgagaaaatgcctct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 caacttggcacaagttagagtagtttgagaggggagaagctcaattgagaaaatgcctct 138
Query: 541 ataagtttgggctgtaggcaagcctggagggcactttcttaattcgtggttgacgtggga 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 ataagtttgggctgtaggcaagcctggagggcactttcttaattcgtggttgacgtggga 78
Query: 601 gggcccagt 609
|||||||||
Sbjct: 77 gggcccagt 69
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
