BAC Information

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BAC

Clone NameMSMg01-341A14
Chromosome14 (Build37)
Map Location 119,888,983 - 119,889,481
singlet/doubletsinglet
Overlap geneHs6st3
Upstream geneAbcc4, Cldn10, Dzip1, Dnajc3a, LOC100043828, Ugcgl2, LOC619601
Downstream geneEG621324, LOC100043830, Oxgr1, Gabarapl2-ps, LOC100043831, Mbnl2, Rap2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341A14.T7 (MSMg01no341_a14.b1)MSMg01-341A14.TJ (MSMg01no341_a14.g1)
ACCAG454932AG454933
length739740
length of high quality
(start - end)		510 (45 - 554)499 (75 - 573)
definitionCHROMAT_FILE: MSMg01no341_a14.b1 PHD_FILE: MSMg01no341_a14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:10 2005CHROMAT_FILE: MSMg01no341_a14.g1 PHD_FILE: MSMg01no341_a14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:30:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTATTCTCTTGTTCTTGCACGTTAGCTAGTTCCACAGCCTAACAT
ATGTAAAACCAAGCCCAGGAATAAACTATCACTTTTGGAGTTCTCTGTGG
ACATTGCACAGGCTCACCAAGTTTCACAGGCTATTGCCTTCATTCTTGGT
TACCCTTGAGAACCTAATAGTAAGATTCTGTTGGTGAAGACGCCACACAC
TGAGGCATAGCCTCTGTTGATATCAAGCCAATGCTGACTTAGAAACATCT
TCCGTCCTGGGAAGCTTTCACAGTGGAAGAAGGTGTTATGCACACTACCG
GAAGATAAGAGCAGTCATCAGTATTTCCAGATGTGAACTCTGCAAGATGC
AAAAATGGCTGATTTGGCAAGACATTTTAACTGATGCACCGGTGTTCGTG
GGGATAACCAACCACTTTCTGATTGTATTTAAGTACCATTCCACAAGATA
CAACCCATACCTGACTCCATTGTTTGATCACAAATCTGTGACTAGACAGG
CCATAGTGTCTAGATGAGAACTTAACGTTAGTTATTAATATTAACAGGGC
TGGCATTATTCTAAAAGATCTAGGCTTAACCTAGCTCTCACCAAAAAAGG
GTCTATTGTCATGTAAAGAGGATTAACCCCGACACCCACCCCCCTGAAGT
GCGACATCTATTCCCAAATTCACTCGCCCTTTCTTTTTN

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGATGAATGCTACTGACATTT
GCAAAGAGTAAGAAGTCATGACATCATAACTGAGTGTCCCCCAGTGAGCT
CACTGTGAAGTGTTTCTCATCGTTGAGACAGGTTGGAGGCTTCTAATAAC
ATTCATCTGTTCTTCTGACTGTCAAAGGAATTTACTGGGCGTTTACACAA
GCAAGAAAGAAAAATTAGAAAAGAGACCAGTCTTCACTCTTCTTAACACA
AAGACTATCCCCTGTAGGGCTTCCGGGCCAACAGAAGTTCCCCTAAAATA
ATTTAAGCACCTTTTCATCAAACATATTGAACCATCAATAACAGGTCCTC
TTTTTCCCTTACATATCATGAACTGACTGAAGCAAGAATGATACTGAATG
AGACAAGGCAAAGGTTTAATCCATAATAATAAATCAGTCCTTGTATTCAA
ATCTCTCTTCCTTTATCAAAAGTGGTTTGGATGGTTTTTATAAACCTTGT
TTGTGATCATATTTTTTTTCACACCCAACAGACAGTCATGAAGATTCACA
GTTGTCCAATCATCTGAAAGTCATTTTAAACATTAAGCATCCCCTGTGGT
CAATGATGAAATAACCCTTCCTGTTTGAAGACATAGCGTAGCCTCAGGTA
GAGAGACTATAAAGAATAATGTATCACTTTTTTCCTCGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_a14.g1 MSMg01no341_a14.g1 CHROMAT_FILE:
MSMg01no341_a14.g1 PHD_FILE: MSMg01no341_a14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:30:10 2005
         (499 letters)



>mm_chr14_119888783_119889681
          Length = 899

 Score =  957 bits (495), Expect = 0.0
 Identities = 498/499 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcagagatgaatgctactgacatttgcaaagagtaagaagtcatgacatcataactgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ttcagagatgaatgctactgacatttgcaaagagtaagaagtcatgacatcataactgag 640

                                                                       
Query: 61  tgtcccccagtgagctcactgtgaagtgtttctcatcgttgagacaggttggaggcttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 tgtcccccagtgagctcactgtgaagtgtttctcatcgttgagacaggttggaggcttct 580

                                                                       
Query: 121 aataacattcatctgttcttctgactgtcaaaggaatttactgggcgtttacacaagcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 aataacattcatctgttcttctgactgtcaaaggaatttactgggcgtttacacaagcaa 520

                                                                       
Query: 181 gaaagaaaaattagaaaagagaccagtcttcactcttcttaacacaaagactatcccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaaagaaaaattagaaaagagaccagtcttcactcttcttaacacaaagactatcccctg 460

                                                                       
Query: 241 tagggcttccgggccaacagaagttcccctaaaataatttaagcaccttttcatcaaaca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 459 tagggcttccgggccaacagaagttcccctaaaataatttaagcaccttttcatcaaaaa 400

                                                                       
Query: 301 tattgaaccatcaataacaggtcctctttttcccttacatatcatgaactgactgaagca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tattgaaccatcaataacaggtcctctttttcccttacatatcatgaactgactgaagca 340

                                                                       
Query: 361 agaatgatactgaatgagacaaggcaaaggtttaatccataataataaatcagtccttgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 agaatgatactgaatgagacaaggcaaaggtttaatccataataataaatcagtccttgt 280

                                                                       
Query: 421 attcaaatctctcttcctttatcaaaagtggtttggatggtttttataaaccttgtttgt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 attcaaatctctcttcctttatcaaaagtggtttggatggtttttataaaccttgtttgt 220

                              
Query: 481 gatcatattttttttcaca 499
           |||||||||||||||||||
Sbjct: 219 gatcatattttttttcaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space:   434721
Effective search space used:   434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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