BAC Information

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BAC

Clone NameMSMg01-341N11
Chromosome14 (Build37)
Map Location 16,330,306 - 16,330,547
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667152, LOC100042147, Slc4a7, Nek10, Lrrc3b
Downstream geneLOC667205, 1700062C10Rik, LOC667209, EG435389, Oxsm, Ngly1, Top2b, Rarb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-341N11.T7 (MSMg01no341_n11.b1)MSMg01-341N11.TJ (MSMg01no341_n11.g1)
ACCAG455537AG455538
length786789
length of high quality
(start - end)
344 (46 - 389)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no341_n11.b1 PHD_FILE: MSMg01no341_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:11 2005CHROMAT_FILE: MSMg01no341_n11.g1 PHD_FILE: MSMg01no341_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTTCGCTCTGTACCCCATTTTTAATAGGTTATTTGATTTTC
TGGAGTCCATCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTA
TCTGATTTAGGATTGGTAAAGACCCTTTCCCAATCTGCTGGTGGCTTTTT
TGTCTTATTGACAGTGTCTTTTGCCTTACAGAAGATTTGCAATTTTATGA
GGTCCCACTGGTAAATTTTTCTCCTGTGCCCACATCTTCAAGGCTTTTCC
CCACTTTCTCCTCTATATAGTTTCAGTGTCTCTGATCTTATGTGAAGGTC
CTTGATCCACTTCAACTTGTCTTTAGTACAAGGACATAAGAATGTATCAA
TTCGAATTCTTCTACATGACAACCACCAGTTTGTGCCAACTCCATTTGTT
GAACACTCTGTCTTTTTTTCCACTGCATGGTTTTAGCTCCCTTGTTCTAA
GATTAAGTGATCATATTTTGTGCGTCCTTCCTTTCTGGACTTTCCCTTTC
CCCTTTCCTCGCTTTTCTTTTTTCGTCTTCTTCCCCCCCTTTTTTTTCTT
TCCCCCTTCTTTTCCTCTTTTTCTTCCCCTCTCTTCTCTTTTTCCCACCC
GCTTCATCTTCCCTTTTTTTTTCTTTTTTTCTCTTTTTCCCCCTTTCTCC
CTTTTTTCTCTTTTTCCCCGCCCTTTTTTTCCTTCCTTTTTTTTTTTTTC
CCTTTTTCCCCCTCTCCCCTTTTTCTTTCCTTTTTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACTGCTTTGAGAGAAGATAATT
TACTCATCAGTCAGTTAGACGGGTTTATTTGGTGTCAAGGGAAGTGGTTA
GCTTTTGCTTAAGGCTTTCCTGAGTGGCTATTTGTCAAAGACAACTAAAG
ATCATTGCAAATATACTATGGTATATTATGAAGCTTCTTATTTTAAATAA
TAAATAAAGCTAACATTGGCATCAAGGTTTTGATTATATCTGATGACATG
AGTCTTCTGGGTGGAGTAAATGGTCAACATGCGATACATACTGACCTGGT
TCCTCCAGAATACTCTACTGTCCTTCTGCCAGCTCAGGGGTGTCGTAGTG
CGCTTTTTCTCCCTCCCTCCCTATTTTTGTATCTCTCTTCCTCCTCCCCC
CCCTATCAACCCTCCCTTCCCCCTAATTTCTCCTTCCTCATTTCCCCTTC
CCCTCTCATCTTTTCCCTTTTCCCTTTTTCCCCCCCCCCATCCCTTCCTT
CCCCCCCTTCCTCTCACCTATCCTTCCCCTTTCTCTCCCTTTACCCCCCT
TCTTTCCTTTCTTCCTTTCTCCCCCTTTCTTTTCCCCCCCCTTCCCTTCT
TCTTATTTTTTTTTCCCCCCCTTCTTATTTTCCCTACCCAATCCCCCCCC
CCCTTTCTTTTTCTCCCCCCCCCCCCAATATTAACTCCTCCTACCCCCTC
CCCCCCTCCCCCCCTCTTCTTTTCCTTTTCCTTTTCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no341_n11.g1 MSMg01no341_n11.g1 CHROMAT_FILE:
MSMg01no341_n11.g1 PHD_FILE: MSMg01no341_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:11 2005
         (242 letters)



>mm_chr14_16330106_16330747
          Length = 642

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcactgctttgagagaagataatttactcatcagtcagttagacgggtttatttggtgtc 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 tcactgctttgagagaagataatttactcatcagtcagatagacgggtttatttggtgtc 260

                                                                       
Query: 61  aagggaagtggttagcttttgcttaaggctttcctgagtggctatttgtcaaagacaact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagggaagtggttagcttttgcttaaggctttcctgagtggctatttgtcaaagacaact 320

                                                                       
Query: 121 aaagatcattgcaaatatactatggtatattatgaagcttcttattttaaataataaata 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgatcattgcaaatatactatggtatattatgaagcttcttattttaaataataaata 380

                                                                       
Query: 181 aagctaacattggcatcaaggttttgattatatctgatgacatgagtcttctgggtggag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagctaacattggcatcaaggttttgattatatctgatgacatgagtcttctgggtggag 440

             
Query: 241 ta 242
           ||
Sbjct: 441 ta 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)