BAC Information

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BAC

Clone NameMSMg01-342H03
Chromosome14 (Build37)
Map Location 109,711,522 - 109,711,966
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342H03.T7 (MSMg01no342_h03.b1)MSMg01-342H03.TJ (MSMg01no342_h03.g1)
ACCAG455997AG455998
length864716
length of high quality
(start - end)
---470 (65 - 534)
definitionCHROMAT_FILE: MSMg01no342_h03.b1 PHD_FILE: MSMg01no342_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:58 2005CHROMAT_FILE: MSMg01no342_h03.g1 PHD_FILE: MSMg01no342_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:31:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGCTAAAANANNCANNTTTCCCCAAANNNANCCNNCNNANTCCGGCTT
TCCCCGANNATATCTATCCCAATTATACCTTCTGNNAACTGNNNAAATCA
CCACANGAANGTNNTCTCGNTTAACCCTACNGNNACCTACGCNNNNNANN
CNNNACATCCNNNCAANNAACTCCTTNTATCCCCCTTCCCCTCCATTAAC
ACCCCTACTTTTAACTAATTATATACTCTTTCGTTTTCCTTNNNAATCCC
CCCTTAATCATTTACAAGCTCATATTTCTTTTTTCCTTTTAATCCCCTTT
TTTTCTTTGTTTTATTTCCTTCTTTTTTTATAATTGGCGTGCCCCTNNNN
NAANNAACCCCNAANCCCCCCCCCCCNNAAAAAACCCCCAAAAAANNNNN
NAACCNNAAAACACCCCCAAAACCCCCNNATAANAAAAAACCTCCCCCCC
CCNNCACCCCCCCNNCCCCCCCCCCCCCCCCCCCCCNNNNNCCCCNNNNC
CCCCNNNNCCCCCCCCCCCACNNCCCNCNCACANCCCNNCCCCCCCCCCA
AACCCNNNAANNNCNNCCCCCCCCCNNCCCCCCCCCCCCCCCCCCCCCCC
CCCCCNNNNAACCCCCNCCAACCACCCCCCCCCNNCNCCNNNCNNCACNN
ACCCAAANNCCCCCNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCCCCCN
NCCNCANCCCCNCCCNCNNNCNNCCCCCCCCCCCCCCCCCCNCTTTTCCC
CCTCCCCCCCATCCNNNTNNTCCCCCCCCCCCCCCCCNCTCNCCCCNCTC
CCCCTNTTTTCCCCTCNTCCNCCCCCCCTNTATAATCCCCCCCCCCTTCC
TCTTTTTCTCTTCG
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTAGGCGTCATCAGAGAAGCTGACATTTAAGTAGT
GTGCACTCATTAATGAAGGGCTCACAACTAATCAATGTGCAGAGAATTAG
TGACTCTGATATACTCTCCTCCACATGTGACATCTAAAACTATCATCCCA
TGGAAGATGAACATTATGAAAAAGAAAACAGAAAGAAGATATGACCTAGA
GGTTGGCAGTGAGTTCTACTCAATTGTATCTTCTGGTCATTGTATTCATG
TTGGGCGTCCACAGGTAGTTATCTTCAACTTGTACAAAATCGGTTCCCTC
ATGAATGGAAGAAAGGAAATATACTTTATATTGTTGTAGTGCAGATAAAT
GAATCGGCCTTCTCAATAGTTATGAGCTTTTTTTTCTTCTAAAATGGTCT
CTTCTATCTTTTTAAGATAGCAAGTATATTATCAGAATTATTGCCATCCT
GTGGTACAATAAGACATCAAATTTTCTTCTGCGTAAGAATAATCCTTGAC
AAACTTGATTAATGTTCTCCTTCTCTGCCACTGTCCTTAATTTATAGTTA
CTAATATTGCACTCTTGATTTCTAATGGATCAAAGTAAAAATTTCCGTGC
CTATTTTGACTTGATCTGTATTTGCCTTTCCCCCCCCGGTCAAATTTTAT
ACTCTCTATTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_h03.g1 MSMg01no342_h03.g1 CHROMAT_FILE:
MSMg01no342_h03.g1 PHD_FILE: MSMg01no342_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:31:58 2005
         (470 letters)



>mm_chr14_109711096_109711966
          Length = 871

 Score =  822 bits (425), Expect = 0.0
 Identities = 440/445 (98%), Gaps = 1/445 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  tttaagtagtgtgcactcattaatgaagggctcacaactaatcaatgtgcagagaattag 86
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 tttaagtagtgtgcactcattaatgaagggctcacaactaatcaatgtgcagagaattag 812

                                                                       
Query: 87  tgactctgatatactctcctccacatgtgacatctaaaactatcatcccatggaagatga 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 tgactctgatatactctcctccacatgtgacatctaaaactatcatcccatggaagatga 752

                                                                       
Query: 147 acattatgaaaaagaaaacagaaagaagatatgacctagaggttggcagtgagttctact 206
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 acattatgaaaaagaaaacagaaagaagatatgacctagaggttggcagtgagttctact 692

                                                                       
Query: 207 caattgtatcttctggtcattgtattcatgttgggcgtccacaggtagttatcttcaact 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 caattgtatcttctggtcattgtattcatgttgggcgtccacaggtagttatcttcaact 632

                                                                       
Query: 267 tgtacaaaatcggttccctcatgaatggaagaaaggaaatatactttatattgttgtagt 326
           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 631 tgtacaaaatcggttctctcatgaatggaggaaaggaaatatactttatattgttgtagt 572

                                                                       
Query: 327 gcagataaatgaatcggccttctcaatagttatgagctttttttt-cttctaaaatggtc 385
           ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 571 gcagataaatgaatcggtcttctcaatagttatgagctttttttttcttctaaaatggtc 512

                                                                       
Query: 386 tcttctatctttttaagatagcaagtatattatcagaattattgccatcctgtggtacaa 445
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 511 tcttctatctttttaagatagcaagtatattatgagaattattgccatcctgtggtacaa 452

                                    
Query: 446 taagacatcaaattttcttctgcgt 470
           |||||||||||||||||||||||||
Sbjct: 451 taagacatcaaattttcttctgcgt 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 871
Length adjustment: 10
Effective length of query: 460
Effective length of database: 861
Effective search space:   396060
Effective search space used:   396060
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)