BAC Information

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BAC

Clone NameMSMg01-342K07
Chromosome14 (Build37)
Map Location 87,304,440 - 87,304,832
singlet/doubletsinglet
Overlap geneDiap3
Upstream geneLOC100043301, EG629815, LOC100043306, LOC100043778, LOC100043310, LOC100043311
Downstream geneEG665324, Tdrd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342K07.T7 (MSMg01no342_k07.b1)MSMg01-342K07.TJ (MSMg01no342_k07.g1)
ACCAG456145AG456146
length7431,037
length of high quality
(start - end)
393 (58 - 450)---
definitionCHROMAT_FILE: MSMg01no342_k07.b1 PHD_FILE: MSMg01no342_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:13 2005CHROMAT_FILE: MSMg01no342_k07.g1 PHD_FILE: MSMg01no342_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGCTATACGACTCACTAAATGCAGAGAGAGCGCGGAATTCTCTGCNTTA
CCAACATAATCTCTACATTCTATTCCCAGAGCTTTATGGGTAAGAAAGCT
AACTGTCACTGGAAAAAGACAAAAAACAAATTTAACTGAAAGAGCCTACA
ATATGTCTCTACATTCTATTCCCAGAGCTTTATGGGTAGGGAAGCTAACT
GTCACTGGAAAAAAACACAAAAACAAATTTAACTGAAAGAGCCTACAATA
TGTCAAATATGGAGTACAGATAGGCATAAAAGTTAGGGGACTTGAATTGC
CAACTATGTATCAAGTATAATGTCATTATGTCCAAAGGCTAATAGTATAA
CCTCAGATTCAAGCAAAAACAATCTTGATTTTAAAAAGTACTCCTTCTTT
AAGAGATCATTATGCACAGTGTCTGTACTCCAGATGAACTGTATGACTCA
GTGATTGCAAAGCTCATTTCTTTTGTACTCAATTCTCCATGCAGTAGGAA
CAGGACATGGCTAGTCTCAGATCCAATGTTATTCTGATTCCCTTCTAAAG
GATGATTTTTTTTATATGTTCCTAACACCTTATTTTTCCTCATTTTTTTC
ACCCCAGGTTTATTTAATTATTTTTTTCCGCATACCCCGCTCCTTTTCTC
CCTTTTATTTGCGCCCTATTTTTGTTACTACGCTGTATCTCATTCTTCAT
ATATTTTAGCCAGTTCTTTCTATATCCACATTACTCCACACCC
GCGTTATAGTAATGATAGCGCAGTATGTCCCTGTGTCGGTGTCCCGGCNC
CTCGAGGTTCTCGTTTTCGTTANAACAATCTCTCACAGGGTCGCAACCCC
TAAATTAAGAAAAGGGTGTTATCCCGGCGCGGGAAAAATCTCCATAGACA
CCTTTAAATAGGGGGCGCGTGGGGCGTTTTTTATTAAAACACTTGTGGGG
GGGTGTTAATTACAAAGCGCCTTAATAATAATAATGATCTCTCTTTCTAA
CAAGGCGCTACTTTTTGTTTCTATTCCTCGTGGCGTGGCGTGCGCCTTTC
CATATACCCCCTCCGTCGCCGGTGGCGCAAATAACACCCCTCTTTTTTGC
GAGCGGTGGCGCCGCATGAATAGAAAACAGGTGCGTTTGGGTCGCGCCCC
TCCCGTTCTTCCCTCTGTGGGTATACAATATACACTAAAAAAACCCCGCT
CGGTGGGTTGGTTCCCTATTTTTAGCCGGAGGGCGGCGCCTTTATTCCGC
CCTTGCGGGTTTTTGTTTTCCCCTTTCCTCTCCCTACTTCTCTCTTCAGT
TGTTTTTATTCGCACTCCACCTCTTTTATTGTTTTGTTCGTTTGTTGTCT
CCCCCCATCCCTCTTCGTTACCATAAATAATGATTCGCACGATGACACGG
CGCCGTATCGTGCTCCGCCCCCCAGCCCTTGTCGGTTATCTCTAGAATCC
GCCACCATTCTTTTCCCTTTATATATATATTTTNTCCTCTCCACTACCTC
TACCTCCACAACACTTATTCTTGCCTCGTTCTGTGGGGGCTGTGGGCCCT
CTTCTTCTCTTTCCCTCATCCCTACCATTCAGTTTTTTCTTATTCCTGTT
TCTTCCACCCCGTCTACCTCACTACAAATACTAATATTATTATCTCGCGT
CTGTGGCGCGAATGTCCCGCCCGCTCGCTATACCTTCCATCCTCTCTTTC
TCGTTTCGCCGCCGCCCTACGGGCTCTCTGGTCACTCTGACGTCACACGC
CGCCCCCCCTCTTTCGCGTCTGTGTTTATCCTCTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_k07.b1 MSMg01no342_k07.b1 CHROMAT_FILE:
MSMg01no342_k07.b1 PHD_FILE: MSMg01no342_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:13 2005
         (393 letters)



>mm_chr14_87304240_87305032
          Length = 793

 Score =  745 bits (385), Expect = 0.0
 Identities = 391/393 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatctctacattctattcccagagctttatgggtaagaaagctaactgtcactggaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatctctacattctattcccagagctttatgggtaagaaagctaactgtcactggaaaaa 260

                                                                       
Query: 61  gacaaaaaacaaatttaactgaaagagcctacaatatgtctctacattctattcccagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaaaaacaaatttaactgaaagagcctacaatatgtctctacattctattcccagag 320

                                                                       
Query: 121 ctttatgggtagggaagctaactgtcactggaaaaaaacacaaaaacaaatttaactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttatgggtagggaagctaactgtcactggaaaaaaacacaaaaacaaatttaactgaa 380

                                                                       
Query: 181 agagcctacaatatgtcaaatatggagtacagataggcataaaagttaggggacttgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agagcctacaatatgtcaaatatggagtacagataggcataaaagttaggggacttgaat 440

                                                                       
Query: 241 tgccaactatgtatcaagtataatgtcattatgtccaaaggctaatagtataacctcaga 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgccaacaatgtatcaagtataatgtcattatgtccaaaggctaatagtataacctcaga 500

                                                                       
Query: 301 ttcaagcaaaaacaatcttgattttaaaaagtactccttctttaagagatcattatgcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcaagcaaaaacaatcttgattttaaaaagtactccttctttaagagatcattatgcac 560

                                            
Query: 361 agtgtctgtactccagatgaactgtatgactca 393
           ||||||||||||||||| |||||||||||||||
Sbjct: 561 agtgtctgtactccagaagaactgtatgactca 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)