Query= MSMg01no342_k10.b1 MSMg01no342_k10.b1 CHROMAT_FILE:
MSMg01no342_k10.b1 PHD_FILE: MSMg01no342_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:13 2005
(490 letters)
>mm_chr14_103703171_103704060
Length = 890
Score = 948 bits (490), Expect = 0.0
Identities = 490/490 (100%)
Strand = Plus / Plus
Query: 1 tcaagagatgaagacagacacatggcacctaagcaagcacatggcagagtgtaggtagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaagagatgaagacagacacatggcacctaagcaagcacatggcagagtgtaggtagaa 260
Query: 61 taaatgggttatattaagttatgatccagtcagataggagcatagctacatggccaagtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaatgggttatattaagttatgatccagtcagataggagcatagctacatggccaagtt 320
Query: 121 acttataaatatattttgaacctacatcttatttctgggaacatgggcctgggagcaaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acttataaatatattttgaacctacatcttatttctgggaacatgggcctgggagcaaga 380
Query: 181 accagacaactcctccaataagacaaggtaaacataaaaactagatcactatatttgacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accagacaactcctccaataagacaaggtaaacataaaaactagatcactatatttgacc 440
Query: 241 aaagaaagaaagatctggcacataattaggttctaaaaatgtggatctaaaaaaaattca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagaaagaaagatctggcacataattaggttctaaaaatgtggatctaaaaaaaattca 500
Query: 301 aataggtagggcatagttgtacatatatattaattagccctactacttgggaaaccaggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataggtagggcatagttgtacatatatattaattagccctactacttgggaaaccaggg 560
Query: 361 caggaagaataaagttcaagaccagcctgggctacaaagcaaggctttgtttcagaaaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caggaagaataaagttcaagaccagcctgggctacaaagcaaggctttgtttcagaaaaa 620
Query: 421 acactttaaggcaaaagaaaaatgaagtgaagccagatacagagaacacagaatcagaat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acactttaaggcaaaagaaaaatgaagtgaagccagatacagagaacacagaatcagaat 680
Query: 481 ctaattcaat 490
||||||||||
Sbjct: 681 ctaattcaat 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no342_k10.g1 MSMg01no342_k10.g1 CHROMAT_FILE:
MSMg01no342_k10.g1 PHD_FILE: MSMg01no342_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:13 2005
(484 letters)
>mm_chr14_103835450_103836333
Length = 884
Score = 866 bits (448), Expect = 0.0
Identities = 475/484 (98%), Gaps = 1/484 (0%)
Strand = Plus / Minus
Query: 1 acaaattaagtccttggggatcaatactgggaactatgcttaaggaatctgactttagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868 acaaattaagtccttggggatcaatactgggaactatgcttaaggaatctgactttagag 809
Query: 61 actggggagaggagctgaagttaaccaggtaaggacagtggaacagacctttaaacagga 120
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct: 808 actggggagaggagctggagttaaccaggtaagggcagtggaacagacctttaaacagga 749
Query: 121 gtccttaggtgataaaaacaaaaccaagcaacaagcaaaccaaaagacaaaaacaaacac 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 748 gtccttaggtgataaaaacaaaaccaagcaacaagcaaaccaaaagagaaaaacaaacac 689
Query: 181 aaaaaaacgatgcttgttagaggctactcaggtggaatcgtgtcagtttaccattgcgta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 -aaaaaacgatgcttgttagaggctactcaggtggaatcgtgtcagtttaccattgcgta 630
Query: 241 gctcagttttctgctgttgtgaccacagagcagaaacgtcgaggggagaggtatttactc 300
|||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 629 gctcagttttctgctgttgtgaccacagagcagaaatgtcgaggggagagatatttactc 570
Query: 301 tgcttcctaatttcagagtttcaatgcagactctgcttctccctagatatttgggccgat 360
||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 569 tgcctcctgatttcagagtttcagtgcagactctgcttctccctagatatttgggccgat 510
Query: 361 ggtgtggcggagcatcttggcagggaaggcatccacacgagttagttatttttgcatgtt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggtgtggcggagcatcttggcagggaaggcatccacacgagttagttatttttgcatgtt 450
Query: 421 aaaaaggaatgcccgatagagacaactaaggcaggaacgagttacttgaatgatgctttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 aaaaaggaatgcccgatagagacaactaaggcaggaacgagttacttgaatgatgctttc 390
Query: 481 cgag 484
||||
Sbjct: 389 cgag 386
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
