BAC Information

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BAC

Clone NameMSMg01-342L18
Chromosome14 (Build37)
Map Location 31,652,161 - 31,829,934
singlet/doubletdoublet
Overlap geneTmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3
Upstream geneEG665431, Selk, Actr8, Il17rb, Chdh, Cacna1d, LOC665399, Dcp1a, Tkt, Prkcd, EG665466, Rft1, Sfmbt1
Downstream genePbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1, Colq, Hacl1, Btd, Ankrd28
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-342L18.T7 (MSMg01no342_l18.b1)MSMg01-342L18.TJ (MSMg01no342_l18.g1)
ACCAG456214AG456215
length721724
length of high quality
(start - end)		554 (33 - 586)513 (63 - 575)
definitionCHROMAT_FILE: MSMg01no342_l18.b1 PHD_FILE: MSMg01no342_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:20 2005CHROMAT_FILE: MSMg01no342_l18.g1 PHD_FILE: MSMg01no342_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:20 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,829,374 - 31,829,934)(31,652,161 - 31,652,672)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTATATCG
CTGTTGAAGTCAGAGTCTAAAGGGTGGGCAGTGGATTCCCAATGTGCTTG
CTTGCTAGAGCTCCCCATTTCAGGCATGCATTTCCCAAGCTCACCTACCT
GCCTTCTAAAAACGCCTGTTAACCTAAGGACTCAATTGGGTAGATTATAT
GTCCAGACTTAACAGTCAACATACTTGATAGTGAAATGCATACAGGAGAT
CCTGTCTTCTGGATTCAGTGTTGAGGGTGCTACTCAGTAAGGACTGCTGC
TCTGATGGTTTCTTGACAGGTGATTGAAGCCTCAGACATTGTGTTAGAAG
TTTTGGATGCCAGAGATCCTCTTGGTTGCAGGTGTCCTCAGATAGAAGAA
GCTGTTATCCAGAGTGGGAGTAAGAAGCTGATACTTGTATTAAATAAGTC
TGGTGAGTACAAACACTCCCCTTTATCTATTTTGTGCACTATGAGGTATG
AGGAAAATATCGGACAGTCTGATTACCACTGAAGACTGATAAGATCCAAC
TCTGACCTCAACAAAGCCAATGAATGTGCACTCTGGTGGGCAAAGACCTG
GGGGGAGGTAATTTCTGCAAGTGATTATCCCTTGGCTTTTCTGGTCTGCT
TTTCAAAATTAACTTCAAAGTGGAGTTCCATACCCCCTTATTTCTCAAAA
GAACTGATGTTGGCGTTTTCC

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCTCTAACACTCAGGAGACGGAAGCAGGAAGATCACAAG
GCTGGGCCAGCCTGAGCTATGTAATGAGTTGCTTTCTCAAAAGCTATTTT
TTTTTTTACAAAAGTAAGATAAGAACACTGGGTGAAGGAAAAAGAAATCA
CGATGTAGCGCCCCATTAAAATTAACTAGAAATAGATTACAGATCAGAAT
ATAGACATGGAAGCCAGAGTTCTAGGAGAAACCATGGAAACAGGAATTCT
GACTGTGGGCAAAGATTTTTGGGGGGACCCTAAAAGCTTATCATTAAAAA
TGATAAATTAGAATTTATTTAAACTTTCTATTCCTTTGTTATTTCTTGTG
TCTCACTGTGTGACCCCAGCTGGCCTGGAATTTACTATGTTGGCCAACTA
GCCCTGAGCCCACAGAGATTTGTGTTTCTGCCTACCAAGTGCTAGGATTA
AAGGTGTGTGCCCCTCATGCCCAGCTTAAAATTTCTATTCTTTAAAACAT
GGAAGAGGCAGAGGCGTTGTTGGTTAAAGGGTTCAAGTCAGTGTGCAGAT
GACTACAATGTAAACTAATTTGGATGAGGCCAGCAAGATGGCTGTAAAGA
TGCTTGTCTTGCAATCCTAGTGACGCGAATTTGATCCCTTGAACTAACTG
GACAAGGTCGTCCTTTAACCTTGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no342_l18.b1 MSMg01no342_l18.b1 CHROMAT_FILE:
MSMg01no342_l18.b1 PHD_FILE: MSMg01no342_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:20 2005
         (554 letters)



>mm_chr14_31829171_31830134
          Length = 964

 Score = 1007 bits (521), Expect = 0.0
 Identities = 547/561 (97%), Gaps = 10/561 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttatatcgctgttgaagtcagagtctaaagggtgggcagtggattcccaatgt 63
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggaattcttagaacgctgttgaagtcagagtctaaagggtgggcagtggattcccaatgt 705

                                                                       
Query: 64  gcttgcttgctagagctccccatttcaggcatgcatttcccaagctcacctacctgcctt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 704 gcttgcttgctagagctccccatttcaggcatgcatttcccaagctcacctacctgcctt 645

                                                                       
Query: 124 ctaaaaacgcctgttaacctaaggactcaattgggtagattatatgtccagacttaacag 183
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 644 ctaaaaaggcctgttaacctaaggactcaattgggtagattatatgtccagacttaacag 585

                                                                       
Query: 184 tcaacatacttgatagtgaaatgcatacaggagatcctgtcttctggat------tcagt 237
           |||||||||||||||||||||||||||||||||||||| ||||||||||      |||||
Sbjct: 584 tcaacatacttgatagtgaaatgcatacaggagatcctatcttctggattcactgtcagt 525

                                                                       
Query: 238 gttgagggtgctactcagtaaggactgctgctctgatggttt----cttgacaggtgatt 293
           ||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||
Sbjct: 524 gttgagggtgctactcagtaaggactgctgctctgatggtttcttacttgacaggtgatt 465

                                                                       
Query: 294 gaagcctcagacattgtgttagaagttttggatgccagagatcctcttggttgcaggtgt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 gaagcctcagacattgtgttagaagttttggatgccagagatcctcttggttgcaggtgt 405

                                                                       
Query: 354 cctcagatagaagaagctgttatccagagtgggagtaagaagctgatacttgtattaaat 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 cctcagatagaagaagctgttatccagagtgggagtaagaagctgatacttgtattaaat 345

                                                                       
Query: 414 aagtctggtgagtacaaacactcccctttatctattttgtgcactatgaggtatgaggaa 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 aagtctggtgagtacaaacactcccctttatctattttgtgcactatgaggtatgaggaa 285

                                                                       
Query: 474 aatatcggacagtctgattaccactgaagactgataagatccaactctgacctcaacaaa 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 aatatcggacagtctgattaccactgaagactgataagatccaactctgacctcaacaaa 225

                                
Query: 534 gccaatgaatgtgcactctgg 554
           |||||||||||||||||||||
Sbjct: 224 gccaatgaatgtgcactctgg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 964
Length adjustment: 10
Effective length of query: 544
Effective length of database: 954
Effective search space:   518976
Effective search space used:   518976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no342_l18.g1 MSMg01no342_l18.g1 CHROMAT_FILE:
MSMg01no342_l18.g1 PHD_FILE: MSMg01no342_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:20 2005
         (513 letters)



>mm_chr14_31651961_31652872
          Length = 912

 Score =  953 bits (493), Expect = 0.0
 Identities = 508/513 (99%), Gaps = 1/513 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctaacactcaggagacggaagcaggaagatcacaaggctgggccagcctgagctatgt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 ctctaacactcaggagacggaagcaggaagagcacaaggctgggccagcctgagctatgt 260

                                                                       
Query: 61  aatgagttgctttctcaaaagctatttttttttttacaaaagtaagataagaacactggg 120
           |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct: 261 aatgagttgctttctcaaaagcta-ttttttttttacaaaagtaagctaagaacactggg 319

                                                                       
Query: 121 tgaaggaaaaagaaatcacgatgtagcgccccattaaaattaactagaaatagattacag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgaaggaaaaagaaatcacgatgtagcgccccattaaaattaactagaaatagattacag 379

                                                                       
Query: 181 atcagaatatagacatggaagccagagttctaggagaaaccatggaaacaggaattctga 240
           ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 380 atcagaatatagacatggaagccagagttctagaaaaaaccatggaaacaggaattctga 439

                                                                       
Query: 241 ctgtgggcaaagatttttggggggaccctaaaagcttatcattaaaaatgataaattaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctgtgggcaaagatttttggggggaccctaaaagcttatcattaaaaatgataaattaga 499

                                                                       
Query: 301 atttatttaaactttctattcctttgttatttcttgtgtctcactgtgtgaccccagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atttatttaaactttctattcctttgttatttcttgtgtctcactgtgtgaccccagctg 559

                                                                       
Query: 361 gcctggaatttactatgttggccaactagccctgagcccacagagatttgtgtttctgcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcctggaatttactatgttggccaactagccctgagcccacagagatttgtgtttctgcc 619

                                                                       
Query: 421 taccaagtgctaggattaaaggtgtgtgcccctcatgcccagcttaaaatttctattctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taccaagtgctaggattaaaggtgtgtgcccctcatgcccagcttaaaatttctattctt 679

                                            
Query: 481 taaaacatggaagaggcagaggcgttgttggtt 513
           |||||||||||||||||||||||||||||||||
Sbjct: 680 taaaacatggaagaggcagaggcgttgttggtt 712


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 912
Length adjustment: 10
Effective length of query: 503
Effective length of database: 902
Effective search space:   453706
Effective search space used:   453706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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