BAC Information

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BAC

Clone NameMSMg01-343C12
Chromosome14 (Build37)
Map Location 90,621,310 - 90,789,145
singlet/doubletdoublet
Overlap genenone
Upstream geneEG328451
Downstream geneLOC100043336, EG639558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343C12.T7 (MSMg01no343_c12.b1)MSMg01-343C12.TJ (MSMg01no343_c12.g1)
ACCAG456535AG456536
length752757
length of high quality
(start - end)
509 (36 - 544)399 (67 - 465)
definitionCHROMAT_FILE: MSMg01no343_c12.b1 PHD_FILE: MSMg01no343_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:52 2005CHROMAT_FILE: MSMg01no343_c12.g1 PHD_FILE: MSMg01no343_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:32:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,788,641 - 90,789,145)(90,621,310 - 90,621,712)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTCAA
GGATCCACTTGTCTTGGTGGATATTGAATCCGTAGCATATGCCAGTTTTT
ACTTATTGGAAAAATATTACAATGATTTAGGAGAGAAAGACAAAATTTTA
ATGATTGAAATATCTTTTCCTGAAAGAGATTCAACTTTAAATTTTTTGTG
ATAATATTAATATTTGACTGTAGGATAGCTAGGATTTGAGAAAAGGTTAG
GATATTGTTTTCTTTTCTTATTTATAACATTACACATAGTTATGATACAC
GTGAATAAGATCAAGGACCTTACTTATTGATCAGGCATTAAGAAAGGTAC
TGTTAAGTATTTAAAAATCAAATTTATATGAACAATAAATTCTCTTTGGG
GATATTTCTTCTGAGATTTATTGTAGTGCAAATAAGCAAAATATGTTTTG
TTGTGTACCAGTCAAACTCCTTCATTGAAAACTGTTAGATATTACTACTT
TAATTGGCAGCCTAAATCTGGGTGAAAGCAGCCCCAAAATGAGGCAGACT
AATACTCAAGTAATAGCCAGATTTATTTCCCTTTATTTAGCCCACATATA
TTCTGAAGATATCCTGAGGAATAAGCAAAGTTTCCTTGAGTTCAGGGTGT
TCTGGCCCAAGGGGCAAGGGCCCATAAGTTTAGGCCTCCCAACCCAAATA
AGAACCCTTGTTTGTTGGAAATACCTTCTCATAATTATTGGGCAAAACCG
GG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTTTTGCTAAGAGCACATTTAAGGGAACTAAGAT
GGGACTGCCTATTTCATGTCTTTCATTTCAATATGTGCCAGAATAAACTT
TTACATTTTTGTAGACTTATGAGTCCCCTATTAATATTTTCCAGAAACCA
GAAAAAATAAATCTTCTGTTATCATCTGTATCTATGTTTTATATATCATC
TAACATGTATCTATAATTTGTGTATCTGTATTTATGAATTTGACTATCTA
TCATCTATCTATCTATCTATCTATCTATCTATCTTTGTGTCTATCATCAT
CTATCTAGTCCACCTATCATTTCTGTATTATTTATACACTTTGGACAACA
CCTTATCTGATTATTGATGACTAATATAATCTAGGGGAGACATTTTTATT
TTAACTTACTGAAGTATATTTGAACATTTTCTTAGACAAATATTATCCTG
TAGGTCATTTTTAAAGGGGATATGGGGTTTCTGAACCTACTTGGAAATTA
TCTATGGGAAGGCCATCCCCCTTTTGGCCAATCCTGGTTTTTTCTTTTTT
TTCTGCCAAAAAACCACCAAATTGAGGCTTGTTTTTCTTTTTTACATCCC
TAATGGTGGTACTCTCTTGGACTCTTTTTCTCCTTTTGTTATCTAAATCG
GTGCTCTATCCTCCGGTGGGGGGTGTTTGTTGACGATTTTATTCTCCTTT
TTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_c12.b1 MSMg01no343_c12.b1 CHROMAT_FILE:
MSMg01no343_c12.b1 PHD_FILE: MSMg01no343_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:52 2005
         (509 letters)



>mm_chr14_90788437_90789345
          Length = 909

 Score =  969 bits (501), Expect = 0.0
 Identities = 504/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttcaaggatccacttgtcttggtggatattgaatccgtagcatatgccagtttt 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gaattcttcaaggacccacttgtcttggtggatattgaatccgtagcatatgccagtttt 650

                                                                       
Query: 65  tacttattggaaaaatattacaatgatttaggagagaaagacaaaattttaatgattgaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tacttattggaaaaatattacaatgatttaggagagaaagacaaaattttaatgattgaa 590

                                                                       
Query: 125 atatcttttcctgaaagagattcaactttaaattttttgtgataatattaatatttgact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 atatcttttcctgaaagagattcaactttaaattttttgtgataatattaatatttgact 530

                                                                       
Query: 185 gtaggatagctaggatttgagaaaaggttaggatattgttttcttttcttatttataaca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gtaggatagctaggatttgagaaaaggttaggatattgttttcttttcttatttataaca 470

                                                                       
Query: 245 ttacacatagttatgatacacgtgaataagatcaaggaccttacttattgatcaggcatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttacacatagttatgatacacgtgaataagatcaaggaccttacttattgatcaggcatt 410

                                                                       
Query: 305 aagaaaggtactgttaagtatttaaaaatcaaatttatatgaacaataaattctctttgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 aagaaaggtactgttaagtatttaaaaatcaaatttatatgaacaataaattctctttgg 350

                                                                       
Query: 365 ggatatttcttctgagatttattgtagtgcaaataagcaaaatatgttttgttgtgtacc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggatatttcttctgagatttattgtagtgcaaataagcaaaatatgttttgttgtgtacc 290

                                                                       
Query: 425 agtcaaactccttcattgaaaactgttagatattactactttaattggcagcctaaatct 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 agtcaaactccttcattgaaaactgttagatattactactttaattggcagcctaaatct 230

                                    
Query: 485 gggtgaaagcagccccaaaatgagg 509
           |||||||||||||||||||||||||
Sbjct: 229 gggtgaaagcagccccaaaatgagg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space:   448601
Effective search space used:   448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no343_c12.g1 MSMg01no343_c12.g1 CHROMAT_FILE:
MSMg01no343_c12.g1 PHD_FILE: MSMg01no343_c12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:32:52 2005
         (399 letters)



>mm_chr14_90621110_90621908
          Length = 799

 Score =  760 bits (393), Expect = 0.0
 Identities = 399/403 (99%), Gaps = 4/403 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttgctaagagcacatttaagggaactaagatgggactgcctatttcatgtctttcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttgctaagagcacatttaagggaactaagatgggactgcctatttcatgtctttcat 260

                                                                       
Query: 61  ttcaatatgtgccagaataaacttttacatttttgtagacttatgagtcccctattaata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcaatatgtgccagaataaacttttacatttttgtagacttatgagtcccctattaata 320

                                                                       
Query: 121 ttttccagaaaccagaaaaaataaatcttctgttatcatctgtatctatgttttatatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttccagaaaccagaaaaaataaatcttctgttatcatctgtatctatgttttatatat 380

                                                                       
Query: 181 catctaacatgtatctataatttgtgtatctgtatttatgaatttgactatctatcatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catctaacatgtatctataatttgtgtatctgtatttatgaatttgactatctatcatct 440

                                                                       
Query: 241 atctatctatctatctatctatctatct----ttgtgtctatcatcatctatctagtcca 296
           ||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||
Sbjct: 441 atctatctatctatctatctatctatctatctttgtgtctatcatcatctatctagtcca 500

                                                                       
Query: 297 cctatcatttctgtattatttatacactttggacaacaccttatctgattattgatgact 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctatcatttctgtattatttatacactttggacaacaccttatctgattattgatgact 560

                                                      
Query: 357 aatataatctaggggagacatttttattttaacttactgaagt 399
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatataatctaggggagacatttttattttaacttactgaagt 603


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space:   308100
Effective search space used:   308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)