BAC Information

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BAC

Clone NameMSMg01-343H22
Chromosome14 (Build37)
Map Location 50,772,218 - 50,772,569
singlet/doubletsinglet
Overlap genenone
Upstream geneNat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729
Downstream geneOlfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741, GA_x5J8B7U07Q4-325-757, GA_x5J8B7TYL6J-3-280, Olfr742, Olfr743-ps1, Olfr744, Olfr745, Olfr746, Olfr747, Olfr748, Olfr749, Ttc5, Gm288, Rpph1, Parp2, Tep1, EG546611, Osgep, Apex1, Tmem55b, Pnp, LOC667034, LOC667210, Rnase10, Rnase9, Rnase11, Rnase12, Olfr750, GA_x5J8B7W5WBF-6267395-6266441, Rnase4, Ang1, Gm75, Rnase6, Rnase1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343H22.T7 (MSMg01no343_h22.b1)MSMg01-343H22.TJ (MSMg01no343_h22.g1)
ACCAG456791AG456792
length803790
length of high quality
(start - end)		397 (33 - 429)352 (63 - 414)
definitionCHROMAT_FILE: MSMg01no343_h22.b1 PHD_FILE: MSMg01no343_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:21 2005CHROMAT_FILE: MSMg01no343_h22.g1 PHD_FILE: MSMg01no343_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACTTAGG
AGGTATTCAATGATTAAGTAAATAGGATAACCCAGTCTATGAACAGTCAG
CCTCATTTTCTGTCTATTCCTGTTACTTCTTAATGGGCTCATGAAAGAAG
TTCCATGTTAGCAGAGATGGAGGTTATTCATGGGCTAGATTTCCACTCAT
CAAAACTGTCATAGTTACAACTGTTTCTGAGTGCCAGCTCTATCAACAAC
AGAGACAACTACTATGACTCAAAATATGACATCATTTCCCATGGTGAGCA
GTTAATAACCTTGATTCAAGTTGACAATATTGAGTGTCTTAGTCAGGGTT
TCTATTCCTGGACAAGACATCACGAATAAGAAGCAAGTCGGGGAGAAAAG
GGTTTATTTGGCTTACATTTCCACATTGCTGTTCATCACTGAAGGAAGTT
AGGACTGGAACTCAGGCAGGTCAGTTAGCAGAAGTTGATGCCTAGGTCAT
GGAAGAATGTCCTTTACTGGGGTGGTTCCTCTGGGCAATATAAACTGTGT
TCCTTATAAAATCAAAATAACCTCCTCTAAAAAGGGTCCATCTTTAAAGG
GTTTTCCTTTTTTTTATCTCCTATTAGAGTAACCGCTTTCAAAATGTGAT
TTCACTTCACCTTTCTCCTCTTCTAAAATAACCTTTTCTCGGATTAACTT
CTTTCTTTTTGTCAATTCTCATTCTCTCTCATTCTTTCGGATAATTTCTC
CTACCTCTCTCCTTCTTTTACCCACCTCTTTCTTTTCTTCATCTCATCTA
CTG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXACTTTGCCTCTCTGATATGTGTTATAACAGGTGAGATA
TTCTTGACAAAATATGCTTTCAGTGTGTCCAGTTGCATAGTGTATTTAAC
TATTACATTGCACCTCAGAGAGGATTTTAAAAAGAAGAAAATATATGCAG
AAGCAGGAAGCTGATGTGAAGATATTCATGTCTGTACTTTAGCATTCTTG
GGATAATCTGTGAGACTTTGCGCAACGTTCTGAAGTATTGCTGGGAAAAG
TAGGAAAAAACATGACTACTTTTTAAAAATCCATCGTGAAACTTTTTTCT
GTCATCCAAATAAAAAGCAAATAAGCATGTAAGCATTTGAATCAAAAATG
AGAAGGAAATGAGAAAGTATGGAAGGAGGGAGGGAGNNNNNNNNNNNNNN
NNNNNNNNNGNGNGNNNNGGNNGNNGGGGGGGGGGGGGGGGNNGGGGGNG
NGGGGGGNNGGNNGNGTTGNGGNGTGGGNGGGNNNGNGTTGGNGTTNGGG
GNNTTTTTTTTGNNNTGTTTTTTTTTTGTTGTTTTNNTNTTTTTTTTTTT
TTGNTTTTGGTTTGTTTTTTTTTNNTGTTTTTNNTTNNTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTGTTTTGTTTTGTTTNTTTGTTTTTGTTGT
TTTTTTTTTTTTTTTGNTGNGGTGTTTTTTTTTTTTTTTGGTTTTTTTTT
TGNGGGTTTTTTTTTTGTTGTGTTGTTTTTTGTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_h22.g1 MSMg01no343_h22.g1 CHROMAT_FILE:
MSMg01no343_h22.g1 PHD_FILE: MSMg01no343_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:21 2005
         (352 letters)



>mm_chr14_50772018_50772769
          Length = 752

 Score =  681 bits (352), Expect = 0.0
 Identities = 352/352 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   actttgcctctctgatatgtgttataacaggtgagatattcttgacaaaatatgctttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 actttgcctctctgatatgtgttataacaggtgagatattcttgacaaaatatgctttca 493

                                                                       
Query: 61  gtgtgtccagttgcatagtgtatttaactattacattgcacctcagagaggattttaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gtgtgtccagttgcatagtgtatttaactattacattgcacctcagagaggattttaaaa 433

                                                                       
Query: 121 agaagaaaatatatgcagaagcaggaagctgatgtgaagatattcatgtctgtactttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 agaagaaaatatatgcagaagcaggaagctgatgtgaagatattcatgtctgtactttag 373

                                                                       
Query: 181 cattcttgggataatctgtgagactttgcgcaacgttctgaagtattgctgggaaaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cattcttgggataatctgtgagactttgcgcaacgttctgaagtattgctgggaaaagta 313

                                                                       
Query: 241 ggaaaaaacatgactactttttaaaaatccatcgtgaaacttttttctgtcatccaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggaaaaaacatgactactttttaaaaatccatcgtgaaacttttttctgtcatccaaata 253

                                                               
Query: 301 aaaagcaaataagcatgtaagcatttgaatcaaaaatgagaaggaaatgaga 352
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaaagcaaataagcatgtaagcatttgaatcaaaaatgagaaggaaatgaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 752
Length adjustment: 9
Effective length of query: 343
Effective length of database: 743
Effective search space:   254849
Effective search space used:   254849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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