BAC Information

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BAC

Clone NameMSMg01-343J20
Chromosome14 (Build37)
Map Location 107,952,436 - 107,952,736
singlet/doubletsinglet
Overlap geneLOC668752
Upstream geneLOC668748
Downstream geneEG668754, LOC668757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-343J20.T7 (MSMg01no343_j20.b1)MSMg01-343J20.TJ (MSMg01no343_j20.g1)
ACCAG456881AG456882
length797752
length of high quality
(start - end)		307 (33 - 339)331 (67 - 397)
definitionCHROMAT_FILE: MSMg01no343_j20.b1 PHD_FILE: MSMg01no343_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:31 2005CHROMAT_FILE: MSMg01no343_j20.g1 PHD_FILE: MSMg01no343_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:33:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATTAACTA
TGGCTTGACAAAGGCATTGCGATAGAACTTGATATTAATAATACATATTA
GCTAAAACAATTCATAGATAAAATAGTTAAAACATAAATATAATAATCTA
TCTTTGTTGTTTATTTCCACTTTTTATAAATAACCAGGGATGTATTTGTG
TTTGTATTTCATGTATTGCAGAGGTTTCTCTGTCTCTGTCTCTTCTTTTG
ATATTAGCCCTCAAATTTATTTATGTTTGCAATTTGTTTTCTTCTGATGT
GTGGCTTGCCTTGTTTTCTTTGGATTGTAGAATTCATACAAGTTGAAACA
ATCCACTTACCCTGAATTTCTATTCATACCTGATTTCCCTACCAGATATC
CTTGTCCCCCCCCCATACCATGGTTTGGAATCTCCTCCTTCATTGCTTTA
CTTTGCGGCTTTATATGTTTTCTAACTGTTTATTCTCTCTCCCTCCACCA
TCTTTTCCCCCCCCCTTTACCTCTCATCTGTCTTTTCTTCTCCTCCTCTC
CTAGCATTTCTCTCTTCTCCTCTTCTTTGATCGCTCTTTCACCTCTGTTT
CTTCTTCCCCTCTTTTATTTTTCTTTGATCCCCTAATACGTTCTCCCACC
TGCCCTCTTTTTTTACTTCCCTCTCCCCCCTCTTCTTCTATTTCCTCCCA
CATGTTCCCCTTTTTATTTCCCTACTATTCCCCTCCTTTTCACTGTTTTC
TCTCTCTTCGTCATCTATCTCCCCCCTTTGCTTCTTCCCCTTATTCG

TGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXACAGAGACTGAATTAGCATGAACAGGGCCTGCAC
AGATCTAGGCCAGATGGAGTCCCAGAACTGAGAGGCACTGAAGTTCACAC
GAAACCCTGTCCGCTAATCCAAAAACTATCTTTAGTTGATAACTATTAGC
AAACAAAACTTGCTTCTCTTCAATGGAGTCCCACTGAGTATACAAACACG
CCTAATGGCAGGCTTCATGCCCAGGGGTAAAAATGAGACCAATTACATTT
ATGGAGTTTCTTAGTTCCATAGTGCTTTGTTCACTATAATTTAACCTCAC
AAGTCCTTGGTATATATATTATTTTTTCCTCTTTTGTGTTCCGTATGGNA
GTTATTCGCCCCCCCCCGCCCGCGTTTTCTCTTGCTCTTTCTTTCTTGGC
TTTTTGCTTTCCTGTCTTTCTTTTTCTGGCTCCCTCGGGTCCCTCCTCCT
CCCTTTTTTTTTTTTTTTTTCCGCTCCTTTCCTCTTTTCTTTTTTTTTCT
CCTCCCGGTTTTTTTTTCTCTTTCTCTCTTTTCTTTTTCCTTCCTCTCTT
TTTTTTTTTTTCTTTTCCCTTCCTTTTTTTTCTTTTTTCCTTCTTCCCTC
TTTACTCTCTTCTGCACCCCTTTCCTTTTCTCTTTCTCATTCCCTTCCTT
TTTTCATTCTTCCTTTTTTTATTCTTCTTTTCCTTCCTTTTACTTTCTTT
CT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no343_j20.b1 MSMg01no343_j20.b1 CHROMAT_FILE:
MSMg01no343_j20.b1 PHD_FILE: MSMg01no343_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:33:31 2005
         (307 letters)



>mm_chr14_107952232_107952936
          Length = 705

 Score =  551 bits (285), Expect = e-161
 Identities = 298/303 (98%), Gaps = 2/303 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattaactatggcttgacaaaggcattgcgatagaacttgatattaataatacat 64
           ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattaactatggtttggcaaaggcattgcgatagaacttgatattaataatacat 264

                                                                       
Query: 65  attagctaaaacaattcatagataaaatagttaaaacataaatataataatctatctttg 124
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 265 attagctaaaacaattcatagataaaatagttaaaacataaatataataatct--ctttg 322

                                                                       
Query: 125 ttgtttatttccactttttataaataaccagggatgtatttgtgtttgtatttcatgtat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 ttgtttatttccactttttataaataaccagggatgtatttgtgtttgtatttcatgtat 382

                                                                       
Query: 185 tgcagaggtttctctgtctctgtctcttcttttgatattagccctcaaatttatttatgt 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 383 tgcagaggtttctctgtctctgtctcttcttttgatattagccctcaaatttatatatgt 442

                                                                       
Query: 245 ttgcaatttgttttcttctgatgtgtggcttgccttgttttctttggattgtagaattca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgcaatttgttttcttctgatgtgtggcttgccttgttttctttggattgtagaattca 502

              
Query: 305 tac 307
           |||
Sbjct: 503 tac 505


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 705
Length adjustment: 9
Effective length of query: 298
Effective length of database: 696
Effective search space:   207408
Effective search space used:   207408
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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