BAC Information

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BAC

Clone NameMSMg01-344A10
Chromosome14 (Build37)
Map Location 55,216,732 - 55,400,433
singlet/doubletdoublet
Overlap gene4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8
Upstream geneLOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub
Downstream geneLOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344A10.T7 (MSMg01no344_a10.b1)MSMg01-344A10.TJ (MSMg01no344_a10.g1)
ACCAG457190AG457191
length751727
length of high quality
(start - end)		426 (74 - 499)541 (82 - 622)
definitionCHROMAT_FILE: MSMg01no344_a10.b1 PHD_FILE: MSMg01no344_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:05 2005CHROMAT_FILE: MSMg01no344_a10.g1 PHD_FILE: MSMg01no344_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,216,732 - 55,217,157)(55,399,893 - 55,400,433)
sequence
NNNTTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTGGTTCTTCTTTAATCAGCCTGCTCACTTTAAGTTTATTAG
TTCTAATTTTCCTTCTTATTATTTTCTTCTGTGAGTATGGGTGTTTTGCC
TGCGTGTAGGTCTGTGTCTTGGGAGGGTCTGGACCTGGAGTTACAGAAGG
TGGTGAGCCTCCCTGTGGGTGCTAGGAATCAAGCCTGGGTCCTCTGCAAG
AACAGCAAGTGTTTTAGCCAGCGAGCCACTGCCACAGCACGCTTTTGTTT
CTAAGACTGGGTCTTGCTATGGATTCTTGTATGTCCTGAATTCACTTGCC
CAGCTCGGGCATCAGCTCATCCTAGCCTTTGAGTCCTGGGATTATAGGTC
AGGCAGCAAGTGCCACTTAAGAAACAAGAACTATGCTAGCAGTGCCTCTG
AGATACTAAAACACAGACTGACAGTGCATTTTAATTATATTTAGTTACTA
AATAGGCCATGTCTAGGCCAGATGTGGTGAAGCAGGCAGATCTCTGTGAT
TTCTATGCCAGCCTGGTCTATATTATGAGTTAGTTCCAGGTAATCCGGGG
CTTTTGTATTGGACACCCTGTTTTTATCCAATTTTTTTTTCCTTTATAAA
GCCTTAAAGTTAGTTCCTTTTTTCCCTCTATACCGGAATAACTCCTTTTC
CTTTGTTTTCTCTTCCCTTTTTTATAATTTTTTGGGGATTCTTTTTTTAT
C

NTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGAGTCGCTGGTACAGTTC
TATTTTTGTATTTATATATATATATATTCTTTGCCTTCCATTTAAAAACA
CGGCCCTTGTTTGTTAGGCAGTGACACGTGTGACTCTCATTTGCTGTCAC
TTTTAGAGGGTAGGAGCGCACTCTGTTTTCGGAAAAGGGCGTTCTAATTG
GAAACTCTGTTTTTCCACATATCTATACGTTTACACGCACGAGCGTTTAG
AAAAAGACTGCTCTTTTTCGCTTTGGGTGGTCGGAACCCTACGGAGAAAG
ATGGAAAAGGGAGCCCGCCAGCGAAACAACACCGCGAAGAACCACCCGGG
TTCTGACACCAGCCCTGAGGCCGAGGCTAGCTCGGGAGGGGGCGGAGTAG
CCCTGAAGAAAGAGATCGGATTGGTCAGCGCCTGTGGTATCATTGTAGGT
GAGTCCAGGTCCTTTGCGGCCCCCGGCGCCATCCCACCCTCTCTCCGGGG
GTCCTTCGAGGGACTTTAACCCCGCCAAAGCCTCAAAGGCAGCTTTGCTT
TGTCTGTGACTTGTGTTGTCCAACTGCACCGGTCAAGTCGGAGCTATGGA
AGTGATGTTCTGTCATACATTGCTTCTGTCAAACCATGTTGAGCTGTTCT
CTCCCTAAAAAAAAACCAACTAGAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_a10.b1 MSMg01no344_a10.b1 CHROMAT_FILE:
MSMg01no344_a10.b1 PHD_FILE: MSMg01no344_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:05 2005
         (426 letters)



>mm_chr14_55216532_55217357
          Length = 826

 Score =  777 bits (402), Expect = 0.0
 Identities = 420/426 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagcctgctcactttaagtttattagttctaattttccttcttattattttcttctgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagcctgctcactttaagtttattagttctaattttccttcttattattttcttctgtg 260

                                                                       
Query: 61  agtatgggtgttttgcctgcgtgtaggtctgtgtcttgggagggtctggacctggagtta 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtatgggtgttttgcctgcgtgtaggtctgtgtcttgggagggtctggacctggagtta 320

                                                                       
Query: 121 cagaaggtggtgagcctccctgtgggtgctaggaatcaagcctgggtcctctgcaagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagaaggtggtgagcctccctgtgggtgctaggaatcaagcctgggtcctctgcaagaac 380

                                                                       
Query: 181 agcaagtgttttagccagcgagccactgccacagcacgcttttgtttctaagactgggtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agcaagtgttttagccagcgagccactgccacagcacgcttttgtttctaagactgggtc 440

                                                                       
Query: 241 ttgctatggattcttgtatgtcctgaattcacttgcccagctcgggcatcagctcatcct 300
           ||||||||||  | || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgctatggagccatggatgtcctgaattcacttgcccagctcgggcatcagctcatcct 500

                                                                       
Query: 301 agcctttgagtcctgggattataggtcaggcagcaagtgccacttaagaaacaagaacta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcctttgagtcctgggattataggtcaggcagcaagtgccacttaagaaacaagaacta 560

                                                                       
Query: 361 tgctagcagtgcctctgagatactaaaacacagactgacagtgcattttaattatattta 420
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctggcagtgcctctgagatactaaaacacagactgacagtgcattttaattatattta 620

                 
Query: 421 gttact 426
           ||||||
Sbjct: 621 gttact 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space:   340689
Effective search space used:   340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_a10.g1 MSMg01no344_a10.g1 CHROMAT_FILE:
MSMg01no344_a10.g1 PHD_FILE: MSMg01no344_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:05 2005
         (541 letters)



>mm_chr14_55399646_55400586
          Length = 941

 Score = 1046 bits (541), Expect = 0.0
 Identities = 541/541 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggagtcgctggtacagttctatttttgtatttatatatatatatattctttgccttccat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ggagtcgctggtacagttctatttttgtatttatatatatatatattctttgccttccat 729

                                                                       
Query: 61  ttaaaaacacggcccttgtttgttaggcagtgacacgtgtgactctcatttgctgtcact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 ttaaaaacacggcccttgtttgttaggcagtgacacgtgtgactctcatttgctgtcact 669

                                                                       
Query: 121 tttagagggtaggagcgcactctgttttcggaaaagggcgttctaattggaaactctgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tttagagggtaggagcgcactctgttttcggaaaagggcgttctaattggaaactctgtt 609

                                                                       
Query: 181 tttccacatatctatacgtttacacgcacgagcgtttagaaaaagactgctctttttcgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tttccacatatctatacgtttacacgcacgagcgtttagaaaaagactgctctttttcgc 549

                                                                       
Query: 241 tttgggtggtcggaaccctacggagaaagatggaaaagggagcccgccagcgaaacaaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttgggtggtcggaaccctacggagaaagatggaaaagggagcccgccagcgaaacaaca 489

                                                                       
Query: 301 ccgcgaagaaccacccgggttctgacaccagccctgaggccgaggctagctcgggagggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ccgcgaagaaccacccgggttctgacaccagccctgaggccgaggctagctcgggagggg 429

                                                                       
Query: 361 gcggagtagccctgaagaaagagatcggattggtcagcgcctgtggtatcattgtaggtg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gcggagtagccctgaagaaagagatcggattggtcagcgcctgtggtatcattgtaggtg 369

                                                                       
Query: 421 agtccaggtcctttgcggcccccggcgccatcccaccctctctccgggggtccttcgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtccaggtcctttgcggcccccggcgccatcccaccctctctccgggggtccttcgagg 309

                                                                       
Query: 481 gactttaaccccgccaaagcctcaaaggcagctttgctttgtctgtgacttgtgttgtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gactttaaccccgccaaagcctcaaaggcagctttgctttgtctgtgacttgtgttgtcc 249

            
Query: 541 a 541
           |
Sbjct: 248 a 248


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 941
Length adjustment: 10
Effective length of query: 531
Effective length of database: 931
Effective search space:   494361
Effective search space used:   494361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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