BAC Information

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BAC

Clone NameMSMg01-344D21
Chromosome14 (Build37)
Map Location 103,025,782 - 103,026,243
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd6, Uchl3, Lmo7, LOC100043795, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344D21.T7 (MSMg01no344_d21.b1)MSMg01-344D21.TJ (MSMg01no344_d21.g1)
ACCAG457354AG457355
length769761
length of high quality
(start - end)
405 (38 - 442)462 (76 - 537)
definitionCHROMAT_FILE: MSMg01no344_d21.b1 PHD_FILE: MSMg01no344_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:21 2005CHROMAT_FILE: MSMg01no344_d21.g1 PHD_FILE: MSMg01no344_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCT
GTTTATTTCTGTACCCCACACTTAACTGGATTATTTGGTTTGATGCTGTT
TCTTGAGTTCTTTATATATTTTGGATATTATTCCTCTGTCAGATGTGGAA
TTTGGGAAATGTTTTTCCTATTCCATCGGCTGCCACTTTGCTCTATTAAT
GGTGCCCTTTGCCTTACAGAAGCTTTTCAGTTTCTTGAGGCCTTCAGTTT
CTTGATCTTAGTGCCTGAGCTGTTGGTGTTTTTCTCAGGAAGTTGTGCCC
TGTGCCAGTGCATTCAGGGCCATTCCTAATTTTTTCTTCTGTCAGGCTCA
GTGGGTTTCATGTTGAGGTCTTTGATTCACTTGAACTTGAGTTTTGTGGA
GAATGATAGATGTGAATTTATTTGTCTTCTTCTACATGCAGACATCCAAT
TAGACCAGCATGATTGGTTGAAAAAATGCTTGCTTTCTTTCTTTCCTTTC
TTCCTTCTTTCTTTCTTTCTTTCTTTCCTTTCTTTCTTTCTTCCTTTCCT
CCTTCCTCCTTTCATTCCTACTTTCTTTCTTTCCTTCCTTCCTTCCCCCC
TTCTTCCTTCCCTCCTACCTTCNTTTTAAAGGAAAATTTCTGGGCTTTTT
ATTGCAAAAAAAAAAGTAATCCCCCGTTTTCTAAATTTTGCCTGGCTCCT
TATATCAATTTTTTGGCCCCAGCCCTAATCCTTTTCCACCCACTTTGATT
TTTTTCTTTACTCCTAGTG
GAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTATCATCTAATACTACAATAACTA
ATAACCCAATTTTAAGTGGCTAAACACTTAATGAGCATTTATATAAAAAG
ATATAATAGAAGAATTTTTGCTATCACTAATGATAAAAAAAATAAAATAC
AGTGAATAAATATTGTATATTATAACTATATTTAATAATTAACTCTTATA
CAGTTATAAATAGAAAACAGTAAGTCAAAGGACTATATTAGAATATGAAA
AAGTGTTGGGCCTGGTGGTAGCTGCATGTCTGTAATCCCAGTACTTGGGA
GGTAGAAATAGTAAGGTCAGGAGTTCAAAGTCATCCTCTGACTATATAGT
AAGTTCAAGTTTCAAGTGGTATATGAAGCACCATATCAAGAAAAATAATG
AGAAGCAAAATAATATAAAGTAAAATTGTGTAACCCAATAACTTCTACTA
TATTCTCCAAATATTGCCCTAAAACAAGGAGCAGAAGATGGAATTCATAA
GAGAGACTATTCACTGACTCTCCCTACTTTGATCACTGATGATGTCAAAA
CTACTCCATCCTCCAGTGTCAAGAAACATAGATGCTATGAATTGGTTCCA
TTAAATGAACATTCAGTCAAATTTCCCCTTAGCCCCAACCCATAAACCGC
ATCATTAAATGAATTGAATGGCCCGAAAGGAGGGAAAAAAGACCAAATGA
AGTGGAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_d21.g1 MSMg01no344_d21.g1 CHROMAT_FILE:
MSMg01no344_d21.g1 PHD_FILE: MSMg01no344_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:21 2005
         (462 letters)



>mm_chr14_103025582_103026443
          Length = 862

 Score =  839 bits (434), Expect = 0.0
 Identities = 455/462 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctatcatctaatactacaataactaataacccaattttaagtggctaaacacttaatgag 60
           ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ctatcatttaatactacaataactaataacccaattttaaatggctaaacacttaatgag 260

                                                                       
Query: 61  catttatataaaaagatataatagaagaatttttgctatcactaatgataaaaaaaataa 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 catttatataaaaagacataatagaagaatttttgctatcactaatgataaaaaagataa 320

                                                                       
Query: 121 aatacagtgaataaatattgtatattataactatatttaataattaactcttatacagtt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 aatacagtgaataaatattgtatattataactatatttaataattaacacttatacagtt 380

                                                                       
Query: 181 ataaatagaaaacagtaagtcaaaggactatattagaatatgaaaaagtgttgggcctgg 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 381 ataaatagaaaacagtaagtcaaaggactatattagaatatgaaaaagtgttgggcctag 440

                                                                       
Query: 241 tggtagctgcatgtctgtaatcccagtacttgggaggtagaaatagtaaggtcaggagtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggtagctgcatgtctgtaatcccagtacttgggaggtagaaatagtaaggtcaggagtt 500

                                                                       
Query: 301 caaagtcatcctctgactatatagtaagttcaagtttcaagtggtatatgaagcaccata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caaagtcatcctctgactatatagtaagttcaagtttcaagtggtatatgaagcaccata 560

                                                                       
Query: 361 tcaagaaaaataatgagaagcaaaataatataaagtaaaattgtgtaacccaataacttc 420
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcaagaaaaataataagaagcaaaataatataaagtaaaattgtgtaacccaataacttc 620

                                                     
Query: 421 tactatattctccaaatattgccctaaaacaaggagcagaag 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tactatattctccaaatattgccctaaaacaaggagcagaag 662


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space:   385104
Effective search space used:   385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)