BAC Information

Click to search

BAC

Clone NameMSMg01-344H07
Chromosome14 (Build37)
Map Location 52,846,325 - 53,034,146
singlet/doubletdoublet
Overlap geneChd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510
Upstream geneEar11, LOC100042187, EG633215, LOC100042203, LOC633238, EG638695, Vmn2r-ps110, LOC100042224, Vmn2r88, LOC100042247, V2r10, LOC100043041, EG434459, LOC100043031, LOC667289, EG545047, Ear-ps3, Ang4, Ear-ps4, AY358078, Hn1l-ps1, Ear-ps5, Ear6, Mett11d1, Slc39a2, Ndrg2, Gm77, Rnase13, E130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h
Downstream geneOTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-344H07.T7 (MSMg01no344_h07.b1)MSMg01-344H07.TJ (MSMg01no344_h07.g1)
ACCAG457517AG457518
length766752
length of high quality
(start - end)		431 (62 - 492)511 (76 - 586)
definitionCHROMAT_FILE: MSMg01no344_h07.b1 PHD_FILE: MSMg01no344_h07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:39 2005CHROMAT_FILE: MSMg01no344_h07.g1 PHD_FILE: MSMg01no344_h07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:34:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,846,325 - 52,846,755)(53,033,636 - 53,034,146)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTCAGTCTCAGTGTATTGTCCAGAAGGAAGCTGAGAAGAAATACAGAAAT
TATAGTCATACATTTATCAAAGATCTTTTCATTTCAACCACACTCGGGAG
AACTTCATCCTAGTGTTTCCTGAATATTTCATTTATCAAGGAACTAATTT
AGTACTAAAGGCCTGAGAGCTGAAAAAAAAAAAGCTTTTATGCACTGTAA
ACCAAGTAGTAAAACAAAGAAGTGAAACTGTTCTAGCTAGCTTTCATATA
TCGTCTCTGTCTTTTATTGGAGGGTAGTGGGTCAAGACTGGGTTTTTCTC
TGTGTAGGAGGCCTGGCTGTCCTTGAACTCAGAGATTCACCTGCCTCCGC
CTCCCTAATGCTGGGATTAAAAGCGTGTGCCACCACCAACTGGCCCTTAT
ACCATCTCTTATAACTACACACTAGCAATATATTTTGTGACTCAAAGGTA
CTCATTAAATAAAGCTTAAGAACTAGAAATGTAACTCACTAGTAGAGACT
ACCTCTTTGGAAAAAATAGTTCTTTAAAAACAGTTCCTTAACATATGAAT
TCCACATTTAATTATACTATGGAATGCCTGGAAAACAAAAAGGGCTTTAC
CTCTTTTCTTTTACACTTCCTAAGGAAAAGAACTTTGTTCCCCTATAAGA
TGGTTCCTTCTTTTCTTAAAGATATTCTCCCGGGGACGAAAAAAAGGTTG
TCTCTCTCCCATTATT

CCGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGCTTCGAATCTCTAGGCAGTGCTT
CTTCTTGCCCCCTCCCTTAATCAGACGGAGAAAAGCAACACGATAAAAAC
TGGTGACTTGAGATATAGAAGTCACACTCCTTGGAGAGCCATGAAGGGCA
TTTGCCTACAGGGCAAACTCTTGAAAGAATGCTAAATCCTTTTTAAAACA
GAGAGAGGAGCCCTGTACCACAGGCTGGACTGAGCCTCTGGACGGCATCT
CTCTATCTGCAGGACAAGTCCACTCAGGGACAACCAACCAATTCTGCAGC
TCTATACAGGTAAGTCTAAGAGGAAGCAGTGTGGAGAAGCGCTCCACCCA
AGAGAGCACAACCAGCCTTGGAGACCAGATTGTATGGTCTAAACATTAGT
CTCTTCCCATTTCTTTCTGGAACTTTCCCCAACTACTAGGATAAGTTTGA
CTTTTATAAAGTTGAAAAGAGGACTCAGAGAGCTTAATATCTTTTTTTAC
TTTCTCTTTTTATTATGATAGCAATGAAAGGCAAAGGCCGGGAATAGCTC
AGGAGGAGGTGTTGTTAGCTATGCAGAAACAAAGGCAGGCCCAATGCACT
TTCCTCTTCCATTGAAAAAGGCTAAGGTTCCTTCCAAGGGAAGCTCCTTT
TATCTATGGTAAAGGACAAAAATCTCCTCCGGGGAAAACTTTCAGGGGTG
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no344_h07.b1 MSMg01no344_h07.b1 CHROMAT_FILE:
MSMg01no344_h07.b1 PHD_FILE: MSMg01no344_h07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:39 2005
         (431 letters)



>mm_chr14_52846125_52846955
          Length = 831

 Score =  833 bits (431), Expect = 0.0
 Identities = 431/431 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtattgtccagaaggaagctgagaagaaatacagaaattatagtcatacatttatcaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtattgtccagaaggaagctgagaagaaatacagaaattatagtcatacatttatcaaa 260

                                                                       
Query: 61  gatcttttcatttcaaccacactcgggagaacttcatcctagtgtttcctgaatatttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatcttttcatttcaaccacactcgggagaacttcatcctagtgtttcctgaatatttca 320

                                                                       
Query: 121 tttatcaaggaactaatttagtactaaaggcctgagagctgaaaaaaaaaaagcttttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttatcaaggaactaatttagtactaaaggcctgagagctgaaaaaaaaaaagcttttat 380

                                                                       
Query: 181 gcactgtaaaccaagtagtaaaacaaagaagtgaaactgttctagctagctttcatatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcactgtaaaccaagtagtaaaacaaagaagtgaaactgttctagctagctttcatatat 440

                                                                       
Query: 241 cgtctctgtcttttattggagggtagtgggtcaagactgggtttttctctgtgtaggagg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgtctctgtcttttattggagggtagtgggtcaagactgggtttttctctgtgtaggagg 500

                                                                       
Query: 301 cctggctgtccttgaactcagagattcacctgcctccgcctccctaatgctgggattaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctggctgtccttgaactcagagattcacctgcctccgcctccctaatgctgggattaaa 560

                                                                       
Query: 361 agcgtgtgccaccaccaactggcccttataccatctcttataactacacactagcaatat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcgtgtgccaccaccaactggcccttataccatctcttataactacacactagcaatat 620

                      
Query: 421 attttgtgact 431
           |||||||||||
Sbjct: 621 attttgtgact 631


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 431
Length of database: 831
Length adjustment: 9
Effective length of query: 422
Effective length of database: 822
Effective search space:   346884
Effective search space used:   346884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no344_h07.g1 MSMg01no344_h07.g1 CHROMAT_FILE:
MSMg01no344_h07.g1 PHD_FILE: MSMg01no344_h07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:34:39 2005
         (511 letters)



>mm_chr14_53033436_53034346
          Length = 911

 Score =  988 bits (511), Expect = 0.0
 Identities = 511/511 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttcgaatctctaggcagtgcttcttcttgccccctcccttaatcagacggagaaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tgcttcgaatctctaggcagtgcttcttcttgccccctcccttaatcagacggagaaaag 652

                                                                       
Query: 61  caacacgataaaaactggtgacttgagatatagaagtcacactccttggagagccatgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 caacacgataaaaactggtgacttgagatatagaagtcacactccttggagagccatgaa 592

                                                                       
Query: 121 gggcatttgcctacagggcaaactcttgaaagaatgctaaatcctttttaaaacagagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 gggcatttgcctacagggcaaactcttgaaagaatgctaaatcctttttaaaacagagag 532

                                                                       
Query: 181 aggagccctgtaccacaggctggactgagcctctggacggcatctctctatctgcaggac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 aggagccctgtaccacaggctggactgagcctctggacggcatctctctatctgcaggac 472

                                                                       
Query: 241 aagtccactcagggacaaccaaccaattctgcagctctatacaggtaagtctaagaggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aagtccactcagggacaaccaaccaattctgcagctctatacaggtaagtctaagaggaa 412

                                                                       
Query: 301 gcagtgtggagaagcgctccacccaagagagcacaaccagccttggagaccagattgtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gcagtgtggagaagcgctccacccaagagagcacaaccagccttggagaccagattgtat 352

                                                                       
Query: 361 ggtctaaacattagtctcttcccatttctttctggaactttccccaactactaggataag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ggtctaaacattagtctcttcccatttctttctggaactttccccaactactaggataag 292

                                                                       
Query: 421 tttgacttttataaagttgaaaagaggactcagagagcttaatatctttttttactttct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tttgacttttataaagttgaaaagaggactcagagagcttaatatctttttttactttct 232

                                          
Query: 481 ctttttattatgatagcaatgaaaggcaaag 511
           |||||||||||||||||||||||||||||||
Sbjct: 231 ctttttattatgatagcaatgaaaggcaaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |