BAC Information

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BAC

Clone NameMSMg01-345G20
Chromosome14 (Build37)
Map Location 50,101,086 - 50,101,559
singlet/doubletsinglet
Overlap geneSlc35f4
Upstream gene6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864, LOC666972, Exoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik
Downstream gene3632451O06Rik, LOC667006, Olfr722, Olfr723, Olfr724, LOC100041975, Olfr725, LOC100042882, Olfr726, Olfr727, Olfr728, Olfr729, Olfr730, Olfr731, Olfr732, Olfr733, Olfr734, Olfr735, Tlr11, Olfr736, Olfr737-ps1, Olfr738, Olfr739, Olfr740, Olfr741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-345G20.T7 (MSMg01no345_g20.b1)MSMg01-345G20.TJ (MSMg01no345_g20.g1)
ACCAG458253AG458254
length887748
length of high quality
(start - end)
---474 (87 - 560)
definitionCHROMAT_FILE: MSMg01no345_g20.b1 PHD_FILE: MSMg01no345_g20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:52 2005CHROMAT_FILE: MSMg01no345_g20.g1 PHD_FILE: MSMg01no345_g20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:35:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTGGTTTGGCTTTCTCTGTGTCGTCCGTGCCCTATCCCTCCTTTTTCTCT
TCTTCTGCCTTCCTCTTCCTCCCCGCCCTTCCCCCTCTCTCCACCCTCCG
TCCTCTTCCCGCCCCCCCATTCAATTATCGATGGTCCTCCTTTGCTCATC
TCTAGCTACGTGATCACAGTCTTCTCAGGGTTACGGACCCCCCTGGGACG
GATGTACGTCTCCTAGCCAGTCTCTCCCCCTTTTTTTTCCGTGTGTTAAT
ACACTCTTTTCGGGGAAGGCCCCCCCCCAAAATAAAAAATTTTTGTGGGC
GGGGGGGGCCCGGGGCCCCCCTTTAAAAAATTTAACGCGGGAAAAACCGT
TTCCCAACCCCTTTAAAAATTAAAGGTGTTTTCCCCCCCGGCCAAAGAGG
GGGGNAAAAATCCCCCGGGGGCCCGGGGGGGGAAAAAAAAAAATTTTTTC
CCCCCCCCCCCAAATTTTTTTTTTTTAAAAAAAAAATTTTTTTTAAAATG
GGGGGCGCCCCCCCCTTTTTCTTTTTTTAAAAAAAAAATTTTTTTTTTTG
TTTTTTTAAAAAAAATTTTTTTNTAAAAAAAACCCCCCCCCCCCCCTCTT
TTTTTTTGGGTGTGGGGGGGGGNNCCCCCACCCCCCCCTCTCTTTTTTTT
TATTNAAAAAAAAAAAGGGNGGGCAAAAAAAAGAAGAAAGAAGGAGGGGG
CGCCCCCCCCACAAAAAAAAAATATTTTTTGTTTTTTTTCGCCACCCCCC
CTTTTGTTTTTTTTTTTTTAAAAAAAAAAAGATAATTCCCCCCCCCCCCC
CCTCTGTTTTTTGTGTNTTNTTTTGTTTTTATAGANNNNAGACAAAACAA
ACACCCCCCGCCCCCCCGCCAAAGCAAGAAAAAAGAG
TCCCCNTTTACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTGCTGGGGAAA
GACAATCTTTATGTCTTTTCAAATTTTAAATATACCATTGACTATATTTT
GTATTTACTCTCCTCTTCTGAAGTTCCTTATAGTTTCAGATTACCAGATG
CTATTTAGAAGATCCTCTTTCAATGGGATTTGCAATTCACGATGTATAAT
TTCTAATATGATTATATAGATTCAGTCCTAGGCAAATAATCTTGTGTGGA
GCTTTGAACAGTCTCCTTTTTCTTCCCAGATCAAAGAAATTGAAATCTCT
AACACCTGTTCTAGGGTTTTTTTTAAAAAAAGTCTTACTAAAAACTCAAG
AGTACAAGCAAAGTTCACGAGGCCTAATTATACAGAGGGCTCTCAGCTGG
AACGCACAGGAGCGCAGCATGCTGGGGGACAGGCTACAGTATTGTGTACT
GAGCTCTTGATTTCTTTTTGCAAAAAAAAGTTGTGTGAGAAGCAGCTTGT
GAGGAGAGCTAATTAGAGGGGTTTGGGATTCTTAAAATAGCTTCTGCCTG
ACCCATATGTAATGCACGTTTACATCTTGATTACCAAGTATTGAGTCTTT
TATTTGAGGAATTTCTTCACGGCCTTCTTAAAGTCACTTACCCCTGGGCT
TCCTTATACCCCTCGGCTTTTTGGAATTTCTGGCTTCTTTTTTAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no345_g20.g1 MSMg01no345_g20.g1 CHROMAT_FILE:
MSMg01no345_g20.g1 PHD_FILE: MSMg01no345_g20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:35:53 2005
         (474 letters)



>mm_chr14_50100886_50101759
          Length = 874

 Score =  909 bits (470), Expect = 0.0
 Identities = 473/474 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctgctggggaaagacaatctttatgtcttttcaaattttaaatataccattgactata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgctgctggggaaagacaatctttatgtcttttcaaattttaaatataccattgactata 615

                                                                       
Query: 61  ttttgtatttactctcctcttctgaagttccttatagtttcagattaccagatgctattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ttttgtatttactctcctcttctgaagttccttatagtttcagattaccagatgctattt 555

                                                                       
Query: 121 agaagatcctctttcaatgggatttgcaattcacgatgtataatttctaatatgattata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 agaagatcctctttcaatgggatttgcaattcacgatgtataatttctaatatgattata 495

                                                                       
Query: 181 tagattcagtcctaggcaaataatcttgtgtggagctttgaacagtctcctttttcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tagattcagtcctaggcaaataatcttgtgtggagctttgaacagtctcctttttcttcc 435

                                                                       
Query: 241 cagatcaaagaaattgaaatctctaacacctgttctagggttttttttaaaaaaagtctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 cagatcaaagaaattgaaatctctaacacctgttctagggttttttttaaaaaaagtctt 375

                                                                       
Query: 301 actaaaaactcaagagtacaagcaaagttcacgaggcctaattatacagagggctctcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 actaaaaactcaagagtacaagcaaagttcacgaggcctaattatacagagggctctcag 315

                                                                       
Query: 361 ctggaacgcacaggagcgcagcatgctgggggacaggctacagtattgtgtactgagctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctggaacgcacaggagcgcagcatgctgggggacaggctacagtattgtgtactgagctc 255

                                                                 
Query: 421 ttgatttctttttgcaaaaaaaagttgtgtgagaagcagcttgtgaggagagct 474
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 254 ttgatttctttttgcaaaaaaaagttgtgtgagaagcagcttgggaggagagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)