BAC Information

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BAC

Clone NameMSMg01-346B01
Chromosome14 (Build37)
Map Location 12,026,766 - 12,171,256
singlet/doubletdoublet
Overlap geneEG382843, LOC100042427
Upstream geneFhit, LOC100041974, LOC667030
Downstream geneLOC667059, LOC100041996, Ptprg, LOC100042441, 3830406C13Rik, EG667072
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-346B01.T7 (MSMg01no346_b01.b1)MSMg01-346B01.TJ (MSMg01no346_b01.g1)
ACCAG458740AG458741
length753737
length of high quality
(start - end)
490 (35 - 524)528 (68 - 595)
definitionCHROMAT_FILE: MSMg01no346_b01.b1 PHD_FILE: MSMg01no346_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:39 2005CHROMAT_FILE: MSMg01no346_b01.g1 PHD_FILE: MSMg01no346_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:36:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,170,772 - 12,171,256)(12,026,766 - 12,027,293)
sequence
TGCGGCCGCTAAACGACTCCTATATTCGAGAGATCCGCGGAATTCCATAG
GTTTCTTCTGATCTTGGAGGGCTCCAGGGGTGCCGATGCAGAGTGAAAGG
AGAATATCTGTACATGTGTTTTTTAATCTAGTGGATTCTGCAGCATGCTC
ACAGTGGTTTACTTATAGAAAAGGAATCAGATTCTTCAGATAAAGTATTA
CAAATGAGATTTGAAGACAAAAGTAATAACATCCCCTGTGTGGGCTATCA
CATATGGAAAAGCAGCTCTTCCACACACCACTTGTGTTGTTAATAACTCT
TTGACTTCCTCTTGTAAGCCTCCACATGACCCCAAACCTCTTTCAGCACA
GTCTTCCAGGCAGCCATGATAGACACAGAGGATGACGTATTGGTAAATGC
TCATGAATCTTCCTGTAGAGCATTCCGCACAACAATCTTTTATTTCCTTT
GAAGATATACCATAAGTATTCCTCCTGTCCTGTTGAGGTCTGGAGGATAT
GCATTTAAACAGCAGAAATCTGAATCCTGCCTGAAGAGGGCTTCTGTTTA
TGAAGGGAACAACAGAATTCCCCACTCCTTATATTTGGCTGCATTATTTA
AATTTCCTTCCTTGAATTTACCCCGCAACTGCCCTCGATATTTTGTTTTG
GCATATCTTTTTTCCCGATGTCCCACCTCCTTTTTTCCCCCCCCCCTCCT
TTGTTTCCTCCTCTCAGTTATTTTCTCGCTTGTCCCCGTATTATCCTTTT
CCN
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAAACCTCAGATAAAATGCTGGTCTCATGCATCT
TGACCTCCAGTGATAGGAAGGTTTATGGGATGGAGACTGGTAGATCCCTG
AATCTCATTGGGCATCCACTCTAGCTCAATTGATGTGTTCAGGGTCAGTA
AGAGAAGAGACCTTGTCTCAAAAACTAAAGATGGAAAGTGATTGAAGAAA
GATACCAGCATCAACCTCTAGCTTCTACGTGCACATTCATATGTGCATGA
AAACATGTACAAGCATACACACACATACAAACAAACACCACTGAATGGTG
TGTGATTCATCTGGGAAAAAGAGACCCTTAGCTTATCCTGTAACTTCATA
TGGTAAGCCCGAAAAGGCCATGGGACATGAGACCAGAATAGGCTACAGGT
TACCCCTTCAGTTGGAAAAAAATAACGTGAATGCCCTCTGGGAAGTTCTT
TCCTCAATTACTGTGTCTTTTGTCAGAAAATGGGTAGATGTTGCAATTAG
CAAGGCAGATTTATGCATTCCACTATTTTGGATTAGGAAATATGGTCAGG
AATAGAACCATAGTCTCATATTTTTCTAANAGACTATGTGCCATGTTACC
ATTATTTTAAAGCCTCTAGAACTGGCCAAAATTATAAAACCCTTATTACT
ATTTTCGATGAGCCCCTCCTAAAGCTGCTTATGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no346_b01.b1 MSMg01no346_b01.b1 CHROMAT_FILE:
MSMg01no346_b01.b1 PHD_FILE: MSMg01no346_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:39 2005
         (490 letters)



>mm_chr14_12170567_12171456
          Length = 890

 Score =  868 bits (449), Expect = 0.0
 Identities = 476/485 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   gaattccataggtttcttctgatcttggagggctccaggggtgccgatgcagagtgaaag 65
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gaattccatagggagcttctgatcttggagggctccaggggtgccgatgcagagtgaaag 631

                                                                       
Query: 66  gagaatatctgtacatgtgttttttaatctagtggattctgcagcatgctcacagtggtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 gagaatatctgtacatgtgttttttaatctagtggattctgcagcatgctcacagtggtt 571

                                                                       
Query: 126 tacttatagaaaaggaatcagattcttcagataaagtattacaaatgagatttgaagaca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 570 tacttatagaaaaggaatcagattcttcagataaagtattacaaatgagatttgaagaca 511

                                                                       
Query: 186 aaagtaataacatcccctgtgtgggctatcacatatggaaaagcagctcttccacacacc 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaagtaataacatcccctgtgtgggctatcacatatggaaaagcagctcttccacacacc 451

                                                                       
Query: 246 acttgtgttgttaataactctttgacttcctcttgtaagcctccacatgaccccaaacct 305
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acttgtgttgctaataactctttgacttcctcttgtaagcctccacatgaccccaaacct 391

                                                                       
Query: 306 ctttcagcacagtcttccaggcagccatgatagacacagaggatgacgtattggtaaatg 365
           ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 390 ctttcggcacagtcttccaggcagccatgatagacacagaggatgacatattggtaaatg 331

                                                                       
Query: 366 ctcatgaatcttcctgtagagcattccgcacaacaatcttttatttcctttgaagatata 425
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 330 ctcatgaatcttcctgtagagcattccacacaacaatcttttatttcctttgaagatata 271

                                                                       
Query: 426 ccataagtattcctcctgtcctgttgaggtctggaggatatgcatttaaacagcagaaat 485
           ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 270 ccacaagtattcctcctgtcctgttgaggtccggaggatatgcatttaaacagcagaaat 211

                
Query: 486 ctgaa 490
           |||||
Sbjct: 210 ctgaa 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space:   422400
Effective search space used:   422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no346_b01.g1 MSMg01no346_b01.g1 CHROMAT_FILE:
MSMg01no346_b01.g1 PHD_FILE: MSMg01no346_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:36:39 2005
         (528 letters)



>mm_chr14_12026566_12027493
          Length = 928

 Score =  998 bits (516), Expect = 0.0
 Identities = 525/528 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaacctcagataaaatgctggtctcatgcatcttgacctccagtgataggaaggtttatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaacctcagataaaatgctggtctcatgcatcttgacctccagtgataggaaggtttatg 260

                                                                       
Query: 61  ggatggagactggtagatccctgaatctcattgggcatccactctagctcaattgatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatggagactggtagatccctgaatctcattgggcatccactctagctcaattgatgtg 320

                                                                       
Query: 121 ttcagggtcagtaagagaagagaccttgtctcaaaaactaaagatggaaagtgattgaag 180
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcagggtcagtaagagaagagaccctgtctcaaaaactaaagatggaaagtgattgaag 380

                                                                       
Query: 181 aaagataccagcatcaacctctagcttctacgtgcacattcatatgtgcatgaaaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagataccagcatcaacctctagcttctacgtgcacattcatatgtgcatgaaaacatg 440

                                                                       
Query: 241 tacaagcatacacacacatacaaacaaacaccactgaatggtgtgtgattcatctgggaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 441 tacaagcatacacacacatacaaacaaacaccactgaatggtgtgtgattcttctggaaa 500

                                                                       
Query: 301 aaagagacccttagcttatcctgtaacttcatatggtaagcccgaaaaggccatgggaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagagacccttagcttatcctgtaacttcatatggtaagcccgaaaaggccatgggaca 560

                                                                       
Query: 361 tgagaccagaataggctacaggttaccccttcagttggaaaaaaataacgtgaatgccct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgagaccagaataggctacaggttaccccttcagttggaaaaaaataacgtgaatgccct 620

                                                                       
Query: 421 ctgggaagttctttcctcaattactgtgtcttttgtcagaaaatgggtagatgttgcaat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgggaagttctttcctcaattactgtgtcttttgtcagaaaatgggtagatgttgcaat 680

                                                           
Query: 481 tagcaaggcagatttatgcattccactattttggattaggaaatatgg 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagcaaggcagatttatgcattccactattttggattaggaaatatgg 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space:   475524
Effective search space used:   475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)