BAC Information

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BAC

Clone NameMSMg01-347B07
Chromosome14 (Build37)
Map Location 49,376,305 - 49,546,388
singlet/doubletdoublet
Overlap geneLOC666972
Upstream gene4930447J18Rik, Map1lc3-ps2, Peli2, EG624367, LOC100041831, 6720456H20Rik, 4930572G02Rik, Otx2, LOC100041864
Downstream geneExoc5, 4932432K03Rik, LOC218997, Nat12, 1700011H14Rik, Slc35f4, 3632451O06Rik, LOC667006, Olfr722
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347B07.T7 (MSMg01no347_b07.b1)MSMg01-347B07.TJ (MSMg01no347_b07.g1)
ACCAG459510AG459511
length774754
length of high quality
(start - end)		510 (50 - 559)452 (74 - 525)
definitionCHROMAT_FILE: MSMg01no347_b07.b1 PHD_FILE: MSMg01no347_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:56 2005CHROMAT_FILE: MSMg01no347_b07.g1 PHD_FILE: MSMg01no347_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:37:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,376,305 - 49,376,810)(49,545,937 - 49,546,388)
sequence
NNNAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGGCAAACCAGACTTTTATAATAAGATTCTGTCTTTTTATT
TTCTTTAAAGACAGGATCTCATTGTATAGCACTGGTTGTTCTGGAACTCA
CATTGTAGGGCTGGCCTCAAACTCAGAGATCTGCCTGCCTCTGCCCTCTG
AGTCCTGGGATTAATGGCATCGTGCCACCACTGCCTGGCAAGATTTTGCC
TTAAATACTAATGAATGATTGCTACATGCCAGGTACTACTATTCTGAGTT
TCCAGAACAGAAAAGGAGACTATACACACACACACACACACTTACTTGAA
TAAATAAAACGTATACACTAAAGATGTATTTGAGCGGGGTGGAGAGATGG
CTCAGCAGTTAATAGAACTGACTATTCTTCCAGAGGTCCCGAGTTCAATT
CTCAGCAACCACATGGTAGCTCACAACCTTCTGTAATGGGATCCAATGCC
CTCTTCTGGTGTCTCTGAAGGTAGCTACAGTGTACATATATACCTAAAAT
AAATGAATAAATAATTCTTTTTTAAAAAAGATGTATGTGAGCTATCAAAA
TACTGGTAGTTGCTAAAGACACAGAAATAAGATCACTGGTGTAAAAAATA
TTGAAAGGCNNAATCCCCCCCCTTTTGATAAAACTGGCGCCNANNNNGGG
GCTTGAAGAAAACCTGGTGATAAAAAAAGAATTTGGGAGAAAAAAATTCC
CTATTCCCGCGAGTATGTGACGGG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTACGCTGCACTGGTTCATTAAAGAA
GAGTTTTCCGTCAGTTTGTTCTGGAGTAAAGTGAAATGCCCCAAATAAAC
ACACTCTCTAGATTCCCTCAGGACATTCTGCCACAGTAGGAAGACAGGCT
TCTTGAGAAGAAAGGCTGGGTAATGGTGAGTCTCTTATCCAGATCCCTGG
GCCACAGTATGCTGGGCAAAGTGATGGTATAACAAATTGTCATGAGTCAT
CACAGGCACACACAGGTATACATGCACACATGTGCCATGGAAAGAAAGTG
CCCCTTAGGTATTTAATCATTAGTATTTTTAAAGTATTACATGGACAATC
TATCTTTATGACATATTTCACATTGGCATAGTTGATTTTAGGAAGTTTGT
TTTTGTTTTACTCTTTCAGAAAATATTTAGTCTGTGCATGCGTATGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGCGTGATAAAGAGAGAGAGAGACAG
ATATACTTCTTTTTCTTTTTTTTTCTTTCCCCTTCTCCTTTTTTTTCTCT
CCCCCCCCCCAGCACTTTTTTTTTATTCCCACTCTTATTTATTTTTTTAT
TCTCCCCTTTTTTTTCTCTCCCACCCCTCTTTTTCACTCTTTTTCCCCTT
TCTTCTCCCTTCTTCTCCTTTTCCTCTTTTACCACCTCTCCTCTCTTATT
ATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_b07.b1 MSMg01no347_b07.b1 CHROMAT_FILE:
MSMg01no347_b07.b1 PHD_FILE: MSMg01no347_b07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:56 2005
         (510 letters)



>mm_chr14_49376101_49377010
          Length = 910

 Score =  971 bits (502), Expect = 0.0
 Identities = 505/506 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaggcaaaccagacttttataataagattctgtctttttattttctttaaagaca 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcaaaccagacttttataataagattctgtctttttattttctttaaagaca 264

                                                                       
Query: 65  ggatctcattgtatagcactggttgttctggaactcacattgtagggctggcctcaaact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatctcattgtatagcactggttgttctggaactcacattgtagggctggcctcaaact 324

                                                                       
Query: 125 cagagatctgcctgcctctgccctctgagtcctgggattaatggcatcgtgccaccactg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagagatctgcctgcctctgccctctgagtcctgggattaatggcatcgtgccaccactg 384

                                                                       
Query: 185 cctggcaagattttgccttaaatactaatgaatgattgctacatgccaggtactactatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctggcaagattttgccttaaatactaatgaatgattgctacatgccaggtactactatt 444

                                                                       
Query: 245 ctgagtttccagaacagaaaaggagactatacacacacacacacacacttacttgaataa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctgagtttccagaacagaaaaggagactatacacacacacacacacacttacttgaataa 504

                                                                       
Query: 305 ataaaacgtatacactaaagatgtatttgagcggggtggagagatggctcagcagttaat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ataaaacgtatacactaaagatgtatttgagcggggtggagagatggctcagcagttaat 564

                                                                       
Query: 365 agaactgactattcttccagaggtcccgagttcaattctcagcaaccacatggtagctca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaactgactattcttccagaggtcccgagttcaattctcagcaaccacatggtagctca 624

                                                                       
Query: 425 caaccttctgtaatgggatccaatgccctcttctggtgtctctgaaggtagctacagtgt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caaccttctgtaatgggatccaatgccctcttctggtgtctctgaaggtagctacagtgt 684

                                     
Query: 485 acatatatacctaaaataaatgaata 510
           |||||||||| |||||||||||||||
Sbjct: 685 acatatatacataaaataaatgaata 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space:   450000
Effective search space used:   450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no347_b07.g1 MSMg01no347_b07.g1 CHROMAT_FILE:
MSMg01no347_b07.g1 PHD_FILE: MSMg01no347_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:37:56 2005
         (452 letters)



>mm_chr14_49545780_49546631
          Length = 852

 Score =  874 bits (452), Expect = 0.0
 Identities = 452/452 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctacgctgcactggttcattaaagaagagttttccgtcagtttgttctggagtaaagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tctacgctgcactggttcattaaagaagagttttccgtcagtttgttctggagtaaagtg 550

                                                                       
Query: 61  aaatgccccaaataaacacactctctagattccctcaggacattctgccacagtaggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 aaatgccccaaataaacacactctctagattccctcaggacattctgccacagtaggaag 490

                                                                       
Query: 121 acaggcttcttgagaagaaaggctgggtaatggtgagtctcttatccagatccctgggcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 acaggcttcttgagaagaaaggctgggtaatggtgagtctcttatccagatccctgggcc 430

                                                                       
Query: 181 acagtatgctgggcaaagtgatggtataacaaattgtcatgagtcatcacaggcacacac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acagtatgctgggcaaagtgatggtataacaaattgtcatgagtcatcacaggcacacac 370

                                                                       
Query: 241 aggtatacatgcacacatgtgccatggaaagaaagtgccccttaggtatttaatcattag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 aggtatacatgcacacatgtgccatggaaagaaagtgccccttaggtatttaatcattag 310

                                                                       
Query: 301 tatttttaaagtattacatggacaatctatctttatgacatatttcacattggcatagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tatttttaaagtattacatggacaatctatctttatgacatatttcacattggcatagtt 250

                                                                       
Query: 361 gattttaggaagtttgtttttgttttactctttcagaaaatatttagtctgtgcatgcgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gattttaggaagtttgtttttgttttactctttcagaaaatatttagtctgtgcatgcgt 190

                                           
Query: 421 atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 452
           ||||||||||||||||||||||||||||||||
Sbjct: 189 atgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 47
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 452
Length of database: 852
Length adjustment: 10
Effective length of query: 442
Effective length of database: 842
Effective search space:   372164
Effective search space used:   372164
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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