BAC Information

Click to search

BAC

Clone NameMSMg01-347C01
Chromosome14 (Build37)
Map Location 65,140,411 - 65,140,605
singlet/doubletsinglet
Overlap genenone
Upstream geneMtmr9, Xkr6, LOC668306, 2610028A01Rik, Sox7, 4930578I06Rik, Rp1l1, 4933401F05Rik, 1700007N14Rik, 1700049K14Rik, Msra
Downstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347C01.T7 (MSMg01no347_c01.b1)MSMg01-347C01.TJ (MSMg01no347_c01.g1)
ACCAG459544AG459545
length776773
length of high quality
(start - end)
203 (51 - 253)457 (78 - 534)
definitionCHROMAT_FILE: MSMg01no347_c01.b1 PHD_FILE: MSMg01no347_c01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:00 2005CHROMAT_FILE: MSMg01no347_c01.g1 PHD_FILE: MSMg01no347_c01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGGCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCTCTATTTGCAGACGGTTCCACCTTGTGTACTGAAAAGTCC
TATAGGACCCACTAATAAAAATTCAAACAACATGTATGTGTGTGTACTGT
GTGTATGTGTGTGTGGTGTGTGTGTATGTATAGACTGTGTGTGTACATAA
TATACTTTTGAACATACAAGTATCCATTGTGTTTCTATACACCAATAATG
GACATATCAAAGTGATATTTTTCAAAACTTGCGCTTAAAATATCATCACA
ATTTTTAATTATGAATACATTTTTTTTTTTTTCAAGATTTGTATAACGAA
AATTCTAAAACTCAATTGAACCACTTAAGGACTTAAATAATTGGCTACAC
ATTCACCACTCTCAAATAAAATCTTCACATTTCTAATACAGCTTTTACAT
CTATACCTTATTTTCACATTCTTTTCTTTCTCCCGTACTTCTTTAACTTA
ATTCCTCTTACCAAATCCTTCCATCCTTATCTTTACTATCCTTCTTTTCC
ATTTTCCCTTACTTTATTACCATCTCTCTTTTTTATCTATTTTTTTTCCC
ACCCTTATTTACATTCTTTAATTTCCTCGCTTTTATACCCTTATATATAT
ATCCCACCTTTTTTCCGCCTTTCGCTCCTTTTTCTATCCACTTTCCCTTC
CCCCCTCCCCCCCTTCCCTCTTTCCTTATCTCCCCACCCCTTTCCCCTAC
ACACTATCCACTTTTTTATCTCTCCC
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACCCTCTGGTAGAAGAGGAAAGT
AGATACATGATAGACATATGTTCAGGCTAAACACCTATGCACATAAAATA
AAATAAATATATAAATCCTAAGAGAGAGCCGGGTGTGGTGGCGCACGCCT
TTAATCCCAGCACTTGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCGAGG
CCAGCCTGGTCTACAAAGTGAGTTCCAAGACAGACAGCCAGAGGAGCTAT
AAAGAGAAACCCTGTCTCAAAAAACCAAAAAAAAAATAAAAATAAACAAA
AAAAAATAAATCCTAAGAGAGAGAGTGTGTGTACAATGTTCTCGTCAATG
CTAGACATAACCAGGACAGGCTAGGGTATGACAAGAAAGCAAGGTGCAAA
GAATATTCTGGAACAACACAAACAAAGGCAGAATATGACCATAGTTGAAA
AGCATACAAAGAGGACGTTGGAGGGAAAGCAGACCCAGGAGTCTGTGCAA
TGGTCCAGCAGAGTGTATATCAGCACTACTTGTAGCCTTTCTTCAAATCT
CACATAGTCCTAACTCTCCATCCCCAAATCTCCATAGCCTCACAACCCAC
GGGCTTAAACTAAAGCCAAGGTCCAATGCCTTCATAATTCTCCCTTTTGA
AAAATAAAAAAAATCTGGAAGTCTTTAACGGAAATTCTTGGACTGCTTTA
CCCTTATCCCTTGTCCTTTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_c01.g1 MSMg01no347_c01.g1 CHROMAT_FILE:
MSMg01no347_c01.g1 PHD_FILE: MSMg01no347_c01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:00 2005
         (457 letters)



>mm_chr14_65139949_65140805
          Length = 857

 Score =  340 bits (176), Expect = 9e-98
 Identities = 191/196 (97%), Gaps = 1/196 (0%)
 Strand = Plus / Plus

                                                                       
Query: 262 aaaataaacaaaaaaaaataaatcctaagagagagagtgtgtgtacaatgttctcgtcaa 321
           |||||||| | ||| | |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 463 aaaataaa-ataaatatataaatcctaagagagagtgtgtgtgtacaatgttctcgtcaa 521

                                                                       
Query: 322 tgctagacataaccaggacaggctagggtatgacaagaaagcaaggtgcaaagaatattc 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tgctagacataaccaggacaggctagggtatgacaagaaagcaaggtgcaaagaatattc 581

                                                                       
Query: 382 tggaacaacacaaacaaaggcagaatatgaccatagttgaaaagcatacaaagaggacgt 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tggaacaacacaaacaaaggcagaatatgaccatagttgaaaagcatacaaagaggacgt 641

                           
Query: 442 tggagggaaagcagac 457
           ||||||||||||||||
Sbjct: 642 tggagggaaagcagac 657



 Score =  188 bits (97), Expect = 8e-52
 Identities = 100/101 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctctggtagaagaggaaagtagatacatgatagacatatgttcaggctaaacaccta 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 396 accctctggtagaagaggaaagtagatacatgatagacatacgttcaggctaaacaccta 455

                                                    
Query: 61  tgcacataaaataaaataaatatataaatcctaagagagag 101
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgcacataaaataaaataaatatataaatcctaagagagag 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space:   378609
Effective search space used:   378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)