BAC Information

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BAC

Clone NameMSMg01-347E05
Chromosome14 (Build37)
Map Location 100,076,606 - 100,077,076
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3, D14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789, LOC668671, LOC668672
Downstream geneEG546623, Klf12, LOC100043413, EG668683, EG668684
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347E05.T7 (MSMg01no347_e05.b1)MSMg01-347E05.TJ (MSMg01no347_e05.g1)
ACCAG459647AG459648
length787787
length of high quality
(start - end)
243 (73 - 315)471 (75 - 545)
definitionCHROMAT_FILE: MSMg01no347_e05.b1 PHD_FILE: MSMg01no347_e05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:11 2005CHROMAT_FILE: MSMg01no347_e05.g1 PHD_FILE: MSMg01no347_e05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCATGGTCCTAGTGTCAGNXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAGATTTTCTTCTGCCTTTGTAAGCACAACCAATAAGTTTAG
CTGGGTGAGATCTTGCCCTAAGATCACCATTCCCTAAATTTTTTTTACCT
CCTTTCTTAATATTTTTCTGACAGGCTCACAAGTACAGTTGCCTCTGTTC
TTTTATGTCCATTAAGCCCCTTGTGCAATTCATATATTTTCCATAGTTGA
GAAATCATTCTACAGGACAGCTCTTACACTGACTTATTGAACTCATGCTT
TCAGAGTTCTTTCCCACAGTCTTAATGTTTATCCTGATTGTCTCACTCTT
CCAGGGATACATTCCAGCTTCTAAGCCTGCAATGTATTTGGATTAACATG
GAGCCACCAACTGTTATATATGCTTTTCCCTATGAACTATTATCCAGTTA
CTTATGCATATTCATACTTATATTTCTTCCACACTTCAATTTGCTTTTAA
GCTTCACCTTTGCCTTTCCTTACCGTTCCTTTGCCTACCCCCTATTTTTC
TTTAATCTTACACTTATTCCCCTAACCACTTCATTCCCTATTTTCTTTCA
CCACTCTTTTTTCCATTTTTTTCCTTTCTTTCTTTTCTTTTACCTCTTTT
TATTTTTTATATAACTATATACCCTTTAACACTCATTTTCCCTTTCTCTT
TTTCTTTACCCCCTCACCCGCCTCTCCTCTTTCCTTTATTTCCCTACCCC
TTTTAATCTTTTCCTACTCTTATTTTTTATTCTCTCG
GATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGATCAAGAGCCAACTTTTTGGTTGG
GAGCCAACAGTCTTGTTGTGGAAGTACCCATGACTTTCCCAAACCATTTG
GCTCACCTCCTGACGTAATTGCATCTGAGAGACAAATATTTAAATGGGCT
GGAGAGAAGGTAATGGAAGGATTTCAATTACCAAAGAGCATACTGGATTA
CTTTAAGTGGCATAAATCGGCCTTAAGGCAAACTCAAAGACCAGGCACAG
CATAGTTTTCCAATGCAATATGCATCTCCCCTCTCAAAAGGTAACTTTCT
GTGCTCTCAGGCAATGTAAAACAAAGGCTAGGAGTTGAGATGTAATTTGA
GTGGAAATCTATTGGGAAACACAAATCATAATTTCAAATATGGAGCAAAG
CCAAAATGGTTGAGCCTTCTGAAATAATGGTCAAAGGGCTGAAGCTGTGC
TTGAAAATGAATACAGATGATTTTAAAAATTTATGCAAGTATAAATTGAA
AACTGTTGCGTGGTACCTACCAATGAGAAGCAGTGATAAAGTTTTAGAGC
AAGACTTATTACCTTATCCCCCTTGCCCATTAAAAAGTTTAGGCCCCTTT
GCATTTTAAGAATTTTCGCCCTATAGCACCCAAGTTTAGAATCGAATGTG
TGTGTCGGCCCTTGCCTTCATCCGCCTTCCCCCCCGTCTTCCCCCGGTCC
GTGTTCCTTTCTTTCTTTTTCACATCTCTCCTCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_e05.g1 MSMg01no347_e05.g1 CHROMAT_FILE:
MSMg01no347_e05.g1 PHD_FILE: MSMg01no347_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:11 2005
         (471 letters)



>mm_chr14_100076406_100077276
          Length = 871

 Score =  911 bits (471), Expect = 0.0
 Identities = 471/471 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgatcaagagccaactttttggttgggagccaacagtcttgttgtggaagtacccatgac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgatcaagagccaactttttggttgggagccaacagtcttgttgtggaagtacccatgac 260

                                                                       
Query: 61  tttcccaaaccatttggctcacctcctgacgtaattgcatctgagagacaaatatttaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcccaaaccatttggctcacctcctgacgtaattgcatctgagagacaaatatttaaa 320

                                                                       
Query: 121 tgggctggagagaaggtaatggaaggatttcaattaccaaagagcatactggattacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgggctggagagaaggtaatggaaggatttcaattaccaaagagcatactggattacttt 380

                                                                       
Query: 181 aagtggcataaatcggccttaaggcaaactcaaagaccaggcacagcatagttttccaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtggcataaatcggccttaaggcaaactcaaagaccaggcacagcatagttttccaat 440

                                                                       
Query: 241 gcaatatgcatctcccctctcaaaaggtaactttctgtgctctcaggcaatgtaaaacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcaatatgcatctcccctctcaaaaggtaactttctgtgctctcaggcaatgtaaaacaa 500

                                                                       
Query: 301 aggctaggagttgagatgtaatttgagtggaaatctattgggaaacacaaatcataattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggctaggagttgagatgtaatttgagtggaaatctattgggaaacacaaatcataattt 560

                                                                       
Query: 361 caaatatggagcaaagccaaaatggttgagccttctgaaataatggtcaaagggctgaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caaatatggagcaaagccaaaatggttgagccttctgaaataatggtcaaagggctgaag 620

                                                              
Query: 421 ctgtgcttgaaaatgaatacagatgattttaaaaatttatgcaagtataaa 471
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtgcttgaaaatgaatacagatgattttaaaaatttatgcaagtataaa 671


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 471
Length of database: 871
Length adjustment: 10
Effective length of query: 461
Effective length of database: 861
Effective search space:   396921
Effective search space used:   396921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)