BAC Information

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BAC

Clone NameMSMg01-347G23
Chromosome14 (Build37)
Map Location 36,760,876 - 36,761,111
singlet/doubletsinglet
Overlap genenone
Upstream geneGrid1, 4930596D02Rik, LOC100040277
Downstream geneLOC665933, 4930474N05Rik, Gcap14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-347G23.T7 (MSMg01no347_g23.b1)MSMg01-347G23.TJ (MSMg01no347_g23.g1)
ACCAG459777AG459778
length817768
length of high quality
(start - end)
241 (79 - 319)416 (81 - 496)
definitionCHROMAT_FILE: MSMg01no347_g23.b1 PHD_FILE: MSMg01no347_g23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:24 2005CHROMAT_FILE: MSMg01no347_g23.g1 PHD_FILE: MSMg01no347_g23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:38:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATTAGTCTCATGTCACNNNNNGNNNNNNATTTCAGAGAAACCGCGGAA
TCTATGGGATGTCGGAAAATTTGGAGAAACAGGCCACTAGGGATAGGTGC
TTGTGAAAATATTATTCCTCAGACCTTTCCTGTACCAATTTCCACTCCTT
AACTATGAAGAAATTGTATTTAGCCATCATCATTTGAGACCAAAAAAAAA
AAAAGAAAAAACCCATATCTCAGAGCATGTCATAATCCATTGGCACTAAT
AATCAAAACCACACAGACACACACATGTGCATATGTACACATTTGTACAT
GTGTACACATACAAAAAGATAGTATAGAGGGAGGGATGGAGGGAGAGAGG
GCATAATGTATACACCCACCATAGAGAGGGGGAGGGTATTTTATTCCATA
TAAAAGTCTATCCCCCCCACGTTTTTTTTTTTTTTTGTCATATCCTTTTT
TATATCTTACTTGCATTACTCTCTCTCTATATTATGTCTCCTACTTCCAT
TTACACTTCTTTAATCTACTCTTCTCCATTACTATTAAACTATGTTTTAT
TTTCCCCCATTTTTCTTCCCGTCTTCCAACTTTTATTTATTCCCTTTCTT
TTTATTCCCCTTTTTTCCTTCTCTCCCCCTATTTTTACCCTCTATTATCC
TTCTATCCCTACCTACCATCTCCCCTTTCTTAAACGATCCCACTTTTCCT
CTTTTTTCCATTCTTTACCCTATCCATTTTTGATTCACGGCCTGCTTATC
ATTATCCTGTTTACTTATCTTCGCTCTCTCTTTTTTTATTTTTTTTTCTC
TCTTATTTATTCTATCC
NTTTCTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAT
GGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAA
TGCAAATCAAAACAATCCTGAGATTCCACCTCACACCAGTCAGAAAGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAG
AGGAACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCT
GGAAATCAGTCTGGCGGTTCCTCAGGAAATTGGACATAGTACTACCGGAG
GATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGG
TAAGAAGGACACATGCTTTACTATGTTCATAGCAGCCTTACTTATAATAG
CCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAG
AAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAATG
AATTTATGAAATTCCTAAGCCCATAGAATGGACCTGGAGGGCATCCTCTT
GAATGAGGTAAACCTTCCCCAAGGAATTCCACCATATGTTCCTCCTGTAA
AGGGGAATTAACCCCAAAACCAAGGAACCCCAAAATATAAAATCATATTT
TTCTAACCCTTGGAACCTCCATAAAAAGAAAAAACGGGTGGGGTGTCCCA
TTCCTCCCCTCTCAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no347_g23.b1 MSMg01no347_g23.b1 CHROMAT_FILE:
MSMg01no347_g23.b1 PHD_FILE: MSMg01no347_g23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:38:24 2005
         (241 letters)



>mm_chr14_36760676_36761311
          Length = 636

 Score =  431 bits (223), Expect = e-125
 Identities = 235/241 (97%), Gaps = 5/241 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggccactagggataggtgcttgtgaaaatattattcctcagacctttcctgtaccaa 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 436 acaggccactagggataggtgcttgtgaaaatattattcct-agacctttcctgtaccaa 378

                                                                       
Query: 61  tttccactccttaactatgaagaaattgtatttagccatcatcatttgagaccaaaaaaa 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||    |||
Sbjct: 377 tttccactccttaactatgaagaaattgtatttagccatcatcatttgagacc----aaa 322

                                                                       
Query: 121 aaaaaagaaaaaacccatatctcagagcatgtcataatccattggcactaataatcaaaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 aaaaaagaaaaaacccatatctcagagcatgtcataatccattggcactaataagcaaaa 262

                                                                       
Query: 181 ccacacagacacacacatgtgcatatgtacacatttgtacatgtgtacacatacaaaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccacacagacacacacatgtgcatatgtacacatttgtacatgtgtacacatacaaaaag 202

            
Query: 241 a 241
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 636
Length adjustment: 9
Effective length of query: 232
Effective length of database: 627
Effective search space:   145464
Effective search space used:   145464
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)