BAC Information

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BAC

Clone NameMSMg01-348M19
Chromosome14 (Build37)
Map Location 54,747,171 - 54,889,357
singlet/doubletdoublet
Overlap geneA630038E17Rik, EG626545, Dad1, Abhd4
Upstream geneLOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
Downstream geneOlfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-348M19.T7 (MSMg01no348_m19.b1)MSMg01-348M19.TJ (MSMg01no348_m19.g1)
ACCAG460809AG460810
length737750
length of high quality
(start - end)		465 (56 - 520)493 (69 - 561)
definitionCHROMAT_FILE: MSMg01no348_m19.b1 PHD_FILE: MSMg01no348_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:13 2005CHROMAT_FILE: MSMg01no348_m19.g1 PHD_FILE: MSMg01no348_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:40:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,888,893 - 54,889,357)(54,747,171 - 54,747,663)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAGGT
TTGCGCCTGACATGGGTGTGGGGAATGGGACTTGGGTCCCTGCAAGAGGA
GCTAGGGCTCTTAGCCACTAACCTATTTCTTCAGCCCCAAGTTCTTTATT
TTAAAAAGGGACAGCTGAGTGGAGACACACAATAGGAACTTTTAGGTAGG
AGAGGGAGGGAGGGCCAGGTTTTCCTGTGTAAGGAACTTCTGGGTTGAGA
CTGGGAAAATGAACAAGAGTCAGGGAGCAGAATTGTGAAGGCCTAGACCT
AGCTGACAGGGTGCTGACTGGGCAGGGCAGGGCAGAGCAGACCACAGGAT
TTTCTTTTGATTGAGGTTTAACCCACCTGTGCTCCTGACTAACTCCTCTT
CCACCATGGGTGAAAGGATAGTCTGTGCTTTCCTGGACACTACCTGGGAG
AGGGAGTGGCCCACAGGTAGTACCTCAATTGGTTCTGTTCTCCTGTATGG
GGGCTACCTGGACTGCTGTGAGGCAGTACCACTCAGTGCTCTTGTGAGAT
CAATATTACACGGGGTCATCACTGACAGTTTTTACTCTTCTTTATTAGTA
TAGAAAAGAATCCCGAGGCCGCTGAACCTGTATTATCCAGCCACAGTAGC
TAACACTATTCCGTGGGAAGGCTTGTCTTTATACTAATTGCAGAATGAGG
TATGACCTGCCCCGCCTCTGGGTTATAGACCGCTCCN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACTGATGCCTAAGCTAGTGCTATGACAGTGT
AGCTGAGCTATGGAAGTGGGGATCCACTCATCACAGATCGTTAGAGAAGC
ACTTAGAGCAACAATTCTCAACCTGTGGGTTGTGACCCCTTTGGGGGTCA
GAGGAACCCTCTATAGGAGTTTGCATATCAAATATCCTGCATACCAGATA
TTTACATTATGATTCATAACCATACAAAACTTACAGTTATGAAGTAGCAA
TGAAATAATTTTATGGTTGGGAATAGATCACACAAAATGAAGAACTGTGT
TAAAGGGTTGCAGTATTAGGAAGGTTGAGAGCCACTACTTTAGAGTCAGT
AACACAGTGGAGATAAATGAGGCTTCTCAGGGAATTGGGGGGTGGGTCTA
AATTTGTAACTCATTATTTGTTGCAATGAATTAGAATAAACTTTTAGGGC
AAATGTATTAGGTTTTTCTCAATGAAATACTCTATACATGATTGAAAACT
CTATTTTGAAGTTCAATAAGAGTAAATTTTCTACAACAACTTTGATAGGG
TAGTTTTCTGGGTCTGGCCCTCTGGCAGAAACTAGGAACACCGAACTCCC
CGTGGAAAAGACTCTCCCAAAAGAATTGTGACCGTGGTGAATAAAGCGCG
TTCCAATAAGGTAAAAACCGAATACGGGCCTATGTTTCCCTCTTTCTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no348_m19.b1 MSMg01no348_m19.b1 CHROMAT_FILE:
MSMg01no348_m19.b1 PHD_FILE: MSMg01no348_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:13 2005
         (465 letters)



>mm_chr14_54888610_54889474
          Length = 865

 Score =  899 bits (465), Expect = 0.0
 Identities = 465/465 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgacatgggtgtggggaatgggacttgggtccctgcaagaggagctagggctcttagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 cctgacatgggtgtggggaatgggacttgggtccctgcaagaggagctagggctcttagc 689

                                                                       
Query: 61  cactaacctatttcttcagccccaagttctttattttaaaaagggacagctgagtggaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 cactaacctatttcttcagccccaagttctttattttaaaaagggacagctgagtggaga 629

                                                                       
Query: 121 cacacaataggaacttttaggtaggagagggagggagggccaggttttcctgtgtaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 cacacaataggaacttttaggtaggagagggagggagggccaggttttcctgtgtaagga 569

                                                                       
Query: 181 acttctgggttgagactgggaaaatgaacaagagtcagggagcagaattgtgaaggccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 acttctgggttgagactgggaaaatgaacaagagtcagggagcagaattgtgaaggccta 509

                                                                       
Query: 241 gacctagctgacagggtgctgactgggcagggcagggcagagcagaccacaggattttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 gacctagctgacagggtgctgactgggcagggcagggcagagcagaccacaggattttct 449

                                                                       
Query: 301 tttgattgaggtttaacccacctgtgctcctgactaactcctcttccaccatgggtgaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tttgattgaggtttaacccacctgtgctcctgactaactcctcttccaccatgggtgaaa 389

                                                                       
Query: 361 ggatagtctgtgctttcctggacactacctgggagagggagtggcccacaggtagtacct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggatagtctgtgctttcctggacactacctgggagagggagtggcccacaggtagtacct 329

                                                        
Query: 421 caattggttctgttctcctgtatgggggctacctggactgctgtg 465
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 caattggttctgttctcctgtatgggggctacctggactgctgtg 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no348_m19.g1 MSMg01no348_m19.g1 CHROMAT_FILE:
MSMg01no348_m19.g1 PHD_FILE: MSMg01no348_m19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:40:13 2005
         (493 letters)



>mm_chr14_54746971_54747863
          Length = 893

 Score =  953 bits (493), Expect = 0.0
 Identities = 493/493 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactgatgcctaagctagtgctatgacagtgtagctgagctatggaagtggggatccact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cactgatgcctaagctagtgctatgacagtgtagctgagctatggaagtggggatccact 260

                                                                       
Query: 61  catcacagatcgttagagaagcacttagagcaacaattctcaacctgtgggttgtgaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catcacagatcgttagagaagcacttagagcaacaattctcaacctgtgggttgtgaccc 320

                                                                       
Query: 121 ctttgggggtcagaggaaccctctataggagtttgcatatcaaatatcctgcataccaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgggggtcagaggaaccctctataggagtttgcatatcaaatatcctgcataccaga 380

                                                                       
Query: 181 tatttacattatgattcataaccatacaaaacttacagttatgaagtagcaatgaaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatttacattatgattcataaccatacaaaacttacagttatgaagtagcaatgaaataa 440

                                                                       
Query: 241 ttttatggttgggaatagatcacacaaaatgaagaactgtgttaaagggttgcagtatta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatggttgggaatagatcacacaaaatgaagaactgtgttaaagggttgcagtatta 500

                                                                       
Query: 301 ggaaggttgagagccactactttagagtcagtaacacagtggagataaatgaggcttctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggaaggttgagagccactactttagagtcagtaacacagtggagataaatgaggcttctc 560

                                                                       
Query: 361 agggaattggggggtgggtctaaatttgtaactcattatttgttgcaatgaattagaata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agggaattggggggtgggtctaaatttgtaactcattatttgttgcaatgaattagaata 620

                                                                       
Query: 421 aacttttagggcaaatgtattaggtttttctcaatgaaatactctatacatgattgaaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacttttagggcaaatgtattaggtttttctcaatgaaatactctatacatgattgaaaa 680

                        
Query: 481 ctctattttgaag 493
           |||||||||||||
Sbjct: 681 ctctattttgaag 693


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 893
Length adjustment: 10
Effective length of query: 483
Effective length of database: 883
Effective search space:   426489
Effective search space used:   426489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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