BAC Information

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BAC

Clone NameMSMg01-349I19
Chromosome14 (Build37)
Map Location 44,662,710 - 44,663,364
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666396, LOC100041046, LOC100042130, LOC624893, LOC100041069, EG666420, LOC666436, EG638353, LOC666454, LOC100041106, EG638262, EG640992, EG666471, LOC666481, LOC100041143, EG666485, 1700049E17Rik, LOC666492, 1700001F09Rik, LOC673380, LOC100042326, EG666502, LOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1
Downstream geneEar2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402, BC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725, EG624966, EG666744, Ptgdr, Ptger2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349I19.T7 (MSMg01no349_i19.b1)MSMg01-349I19.TJ (MSMg01no349_i19.g1)
ACCAG461378AG461379
length731754
length of high quality
(start - end)		670 (40 - 709)539 (71 - 609)
definitionCHROMAT_FILE: MSMg01no349_i19.b1 PHD_FILE: MSMg01no349_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:11 2005CHROMAT_FILE: MSMg01no349_i19.g1 PHD_FILE: MSMg01no349_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:11 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TATTTGGCGGCGCTATACGACTCACTATAGTCCGAGGATCCGCGGAATTC
TTTGTTCATTTCTGAGCCCCATTTTTTAAAATGGGGTTATTTAATTTTCT
GAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTAT
CTGATTTAGGATAGGTAAAGATTCTTTCCCAATCTGTTGGTGGTCTTTTT
GTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGGAGTTTCATGAG
GTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTAT
TCAGGATTTTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCTCCACTTT
CTCCTCTATAAGTTTCAGTCAACACATTTTCTAATGTGGATCTCTTTCCC
TGAGGACAAACTCTTCTGACACAACAGACTCCATAGACACAGCCTTTGAT
GCTTACCAACTTATTGGTGTTCAACAACTCTGTCTTGAGGAAGACTCCCC
TGAGCAGAGGAAGGTAGATGAACAGGTCAGACCCCTGGTACCCTGACCAA
TTACAGGACTGAGGGAACCTGATAATTCCTCACCTCTAAGTCTCATCCAG
GGAAGCCTGGGTCCCTTTGAAGTGGAGGGTAATACAAACAATCTGCTTAT
AGGTCCTGAGCCTCTCACTTAAGCTTTGGTTCCATTTTCAGAAATCTTTC
CTCTCGAGNCAAAAGTACAATGTGAGGTGAT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTGCTATGGTTTGACACAATTCAAAGCGA
CTGGAAAAACTGTTGGTCCAGTATCTGGAAGAGCTTTTCAGCTACTCTTT
GAGAAGTTTCCTCTCTGTTTTTTAATATTTTTTTTAGATATTTTCTTCAT
TTACATTTAAAATACTATCCCTAAAGTTCCCTATACCTTCCCCCCCCCCC
GCCCTGCTCCCCTACCCACACCCTCCCACTTCTTGGCCTAAAATCAGGAC
AGCTGTTCTAAAGATAGGATATTGCTCCCAACCCCTGTGGCTAGTCATGT
ACCTCAGCACATACTGCAGTCCTACTGGCTCTGGATGGCATAAGCTAGCC
AGCCATGCTGTGCTTGGAGGGCAATGTCAGCTAGTATCTGATGTGATGCA
AGGAGGTCCTGGATTCCCTAGTGCTTAGCACCACCAAGCTGTGATTGCCT
GTGTCCAAGACAAAAGCAGTGAATGTCTGAGAACTTGGTATGTGTCCAGT
TTTATATCCTTTCTTTGATTTTTGCTATCAAACTTCCATGGAACTTAAAG
GAATACACCAAGAATGCAGTGTAGCAAAAGCTTACAGACATAGACTCCTC
ATAGAGGACCAATTGTGTGTGTGTGTGTGCGTGTGTGCCTGCGTCTGTGC
GCGAGTGTGCGCCGTTTTTCCCGTTTTCTTGTCCTGTGGGTCCGTGCTTG
CGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_i19.b1 MSMg01no349_i19.b1 CHROMAT_FILE:
MSMg01no349_i19.b1 PHD_FILE: MSMg01no349_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:11 2005
         (670 letters)



>mm_chr14_44662501_44663569
          Length = 1069

 Score = 1098 bits (568), Expect = 0.0
 Identities = 636/660 (96%), Gaps = 5/660 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttgttcatttctgagccccattttttaaaatggggttatttaattttctgaag 65
           |||||||||||||| |||||||||||||||||   ||||||||||||| |||||||||||
Sbjct: 210 gaattctttgttcagttctgagccccattttt---aatggggttatttgattttctgaag 266

                                                                       
Query: 66  tccaccttcttgagttctttatatatgttggatattagtcccctatctgatttaggatag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tccaccttcttgagttctttatatatgttggatattagtcccctatctgatttaggatag 326

                                                                       
Query: 126 gtaaagattctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtaaagattctttcccaatctgttggtggtctttttgtcttattgacggtgtcttttgcc 386

                                                                       
Query: 186 ttgcagaagctttggagtttcatgaggtcccatttgtcaattctcgatcttacagcacaa 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttgcagaagctttggagtttcatgaggtcccatttgtcaattctcgatcttacagcacaa 446

                                                                       
Query: 246 gccattgctgttctattcaggatttttttcccctgtgcccatatcttcaaggcttttctc 305
           |||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||| |
Sbjct: 447 gccattgctgttctgttcaggaatttttgccc-tgtgcccatatcttcaaggcttttccc 505

                                                                       
Query: 306 cactttctcctctataagtttcagtcaacacattttctaatgtggatctctttccctgag 365
           |||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 cactttttcctctgtaagtttcagtcaacacattttctaatgtggatctctttccctgag 565

                                                                       
Query: 366 gacaaactcttctgacacaacagactccatagacacagcctttgatgcttaccaacttat 425
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gacaaactcttctgacacaaaagactccatagacacagcctttgatgcttaccaacttat 625

                                                                       
Query: 426 tggtgttcaacaactctgtcttgaggaagactcccctgagcagaggaaggtagatgaaca 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 tggtgttcaacaactctgtcttgaggaagactcccctgagcagaggaaggtagatgaaca 685

                                                                       
Query: 486 ggtcagacccctggtaccctgaccaattacaggactgagggaacctgataattcctcacc 545
           ||||| ||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| 
Sbjct: 686 ggtcaaacccc-ggtaccctgaccaattacagggctgagggaacctgataactcctcaca 744

                                                                       
Query: 546 tctaagtctcatccagggaagcctgggtccctttgaagtggagggtaatacaaacaatct 605
           ||||| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct: 745 tctaaatctcatccagggaagcctgggtccctttgaagtgaagggtaatagaaacaatct 804

                                                                       
Query: 606 gcttataggtcctgagcctctcacttaagctttggttccattttcagaaatctttcctct 665
           |||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct: 805 gcttataggtcctgagcctctcacttaaaccttggtttcattttcagaaatctttcctct 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1069
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1059
Effective search space:   698940
Effective search space used:   698940
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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