BAC Information

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BAC

Clone NameMSMg01-349J15
Chromosome14 (Build37)
Map Location 103,322,297 - 103,322,847
singlet/doubletsinglet
Overlap genenone
Upstream geneLmo7, LOC545567, LOC669278
Downstream geneKctd12, LOC668699, Irg1, Cln5, Fbxl3, LOC100043441, Phr1, LOC100043797, Scel, LOC100043448, Slain1, Ednrb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349J15.T7 (MSMg01no349_j15.b1)MSMg01-349J15.TJ (MSMg01no349_j15.g1)
ACCAG461418AG461419
length746789
length of high quality
(start - end)
300 (31 - 330)550 (70 - 619)
definitionCHROMAT_FILE: MSMg01no349_j15.b1 PHD_FILE: MSMg01no349_j15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:16 2005CHROMAT_FILE: MSMg01no349_j15.g1 PHD_FILE: MSMg01no349_j15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGCCGCTATACGACTCCTATATTCAGAGGATCCGCGGAATTCCTGGTGT
TGGAGTCACAGAAATGATAGGACAGCATGGCGGACACTAGTGGTTGAGGG
GGCTGAGTTGGTGGAAAACGGGGAGATCTTGAGCAATGAGAACTTTCAGT
GCATAGAGGAATACGCCCTGGTGTTCTGTTGCATAGCATGGGGATTGTAG
ATAAAACTAATGTATTATATATTTCAAAAATAGTGAAAATAGATACTTTG
GGTGGTGAGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGTGT
GCGTGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTTGNCCGCCTCGTTTCT
TTGCCNTGGCCCCGTCCGTCGTGGTGTGCCTTTTTGCCTGCGTCTTGTGT
CCTGCCCCCTGCTTCTGCCGCCCCTCCTTCTCCCCCTCTTTTGTCGTGCT
GTCCTTCTTCCCTCTGTCTTTCCTCCGCCTCTTCCCCCTTTTCTCCCCGT
TCCCTTTTTTTCCTTCCCCTTTTTTCCCTTTTTCCTCCTTCCCTGCCCCT
TTTTCTCTTCCCTTCCCTTCCCGCCCCCTTCTCTTTTTCCTCCTTCCCCC
CCCCTTCTTTTTTGCCCTTTCCTTTCCCCTTCTCTTTTTTTTCCCCCTTC
TCTCCCCTTCTTCTTCCTCCCCTCTCCTCCTCTCTTTTTCTCTCCCCCCC
CCTTTTTCCTCTTTCTTTTTCCCCCCCCCCTTTTTCCCCCCCTTTN
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAAATGGGTTTCTGGGTTAAGCAGAGTTAAAA
CAGCTTCTCTGTAATGATTTCCTCGGGAAGTTTGAATATGTATAAAGGTA
TCGTGAATCTCCAGGTGCGGAGTCTATGTGCCTTGTTTCCCAAATGTTTT
TTTTTTAACAAAGTATGCAGCCACTGGTGTCCTTCTAGAAACTTCTGGGG
TTACAGATGAATCATGGACATTGTCTCCTAGAACAAGCCAACTAGTCGGG
ATTTATGAGCCCTCGGTTTCTCTGTCTGGAAAATGAAGGCCTTTACTCAA
TGATTCTTGGAAAGTTGCACGTCAATGACATTGTAAAAACTGACGAAGGT
TATAAACCTGCTGCCTCTAGATAATCATAGGCCACCTGTCCACAAAATGT
CAGGCTAAACCCCCCAACTAAAGGTGTTCTGAAAGCCTGCCACATCTACA
GTGCTGAAAGACCCGATACAGGAGCCAGCAGCAGATACCCCTGGATACTG
ACAGCCTAAAATCCTTTCCCTTTTCTTTGGGTTATAAAACTGCAGTTTCT
ACTTCGTTCCTATTCTTAATCTATGTATTCCAATTGCCCCCCATCTTCTA
AAGTAAGCATGTTATCCCAGCCTGAGCAGATAAATTGGCTCCTACCATGG
CCCCANNGGAAAAAAGCAGGAAGAGGCCAAAAACTGTTAAAACCCCCTGC
GGATCTCTGCTTGCCTACCGGGGGAAAGAAGGGAAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_j15.g1 MSMg01no349_j15.g1 CHROMAT_FILE:
MSMg01no349_j15.g1 PHD_FILE: MSMg01no349_j15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:16 2005
         (550 letters)



>mm_chr14_103322098_103323047
          Length = 950

 Score =  980 bits (507), Expect = 0.0
 Identities = 540/551 (98%), Gaps = 1/551 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgggtttctgggttaagcagagttaaaacagcttctctgtaatgatttcctcgggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 200 aaatgggtttctgggttaagcagagttaaaacagcttctctgtaatgatttcctctggaa 259

                                                                       
Query: 61  gtttgaatatgtataaaggtatcgtgaatctccaggtgcggagtctatgtgccttgtttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gtttgaatatgtataaaggtatcgtgaatctccaggtgcggagtctatgtgccttgtttc 319

                                                                       
Query: 121 ccaaatg-ttttttttttaacaaagtatgcagccactggtgtccttctagaaacttctgg 179
           ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| 
Sbjct: 320 ccaaatgtttttttttttaacaaagtatgcagacactggtatccttctagaaacttctga 379

                                                                       
Query: 180 ggttacagatgaatcatggacattgtctcctagaacaagccaactagtcgggatttatga 239
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gattacagatgaatcatggacattgtctcctagaacaagccaactagtcgggatttatga 439

                                                                       
Query: 240 gccctcggtttctctgtctggaaaatgaaggcctttactcaatgattcttggaaagttgc 299
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 gccctcggtttctctgtctggaaaacgaaggcctttactcaatgattcttggaaagttgc 499

                                                                       
Query: 300 acgtcaatgacattgtaaaaactgacgaaggttataaacctgctgcctctagataatcat 359
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acatcaatgacattgtaaacactgacgaaggttataaacctgctgcctctagataatcat 559

                                                                       
Query: 360 aggccacctgtccacaaaatgtcaggctaaaccccccaactaaaggtgttctgaaagcct 419
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aggccacctctccacaaaatgtcaggctaaaccccccaactaaaggtgttctgaaagcct 619

                                                                       
Query: 420 gccacatctacagtgctgaaagacccgatacaggagccagcagcagatacccctggatac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gccacatctacagtgctgaaagacccgatacaggagccagcagcagatacccctggatac 679

                                                                       
Query: 480 tgacagcctaaaatcctttcccttttctttgggttataaaactgcagtttctacttcgtt 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 680 tgacagcctaaaatcctttcccttttctttgggttataaaactgcagtttctactttgtt 739

                      
Query: 540 cctattcttaa 550
           |||||||||||
Sbjct: 740 cctattcttaa 750


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 950
Length adjustment: 10
Effective length of query: 540
Effective length of database: 940
Effective search space:   507600
Effective search space used:   507600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)