BAC Information

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BAC

Clone NameMSMg01-349M19
Chromosome14 (Build37)
Map Location 110,058,025 - 110,058,558
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668761, Slitrk1, LOC640892
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-349M19.T7 (MSMg01no349_m19.b1)MSMg01-349M19.TJ (MSMg01no349_m19.g1)
ACCAG461568AG461569
length750774
length of high quality
(start - end)
539 (61 - 599)601 (69 - 669)
definitionCHROMAT_FILE: MSMg01no349_m19.b1 PHD_FILE: MSMg01no349_m19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:31 2005CHROMAT_FILE: MSMg01no349_m19.g1 PHD_FILE: MSMg01no349_m19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:41:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGGTACAGGATCCGCGGAATTCCAACAG
AGTTTTCCGGAATGGCTGAAAAGCACTTAAAGAAATGTTCAAAATCTTTA
GTGATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCTACCTCACACC
AATTAGGATGGCTAAGATTAGAAATTTATTTTTCTTATGACTTGGTCTTA
CTATATTGTTATCTATAAGTGGTCAATCATGGCAGAGCTGATGCTAGTAT
CAAATTTAGTAACCTCTTAAATTTATTTAGCTATTAAAAATATATAGTAA
TGTATTAGAATATTTTGGTGCACATAAGTAAAACACATTTTTAAATTACA
ATACTTTCCTGTGTGTTGTACTCTTTCTGAAATATGTATTTTTCAAATAT
GTAGCACGGTACTTTAACTTCCCCTTTCAGAATCAGAAATGTAACAATTT
TAATGGTGGAGAAGTAGCCCCATGGTTAAAGCATCAGTTTGGCATTTGTG
AGACTCCAGGTTCAAATGTAATTATTGAATATTTAGCACCTATTGACATT
AGTGTAAATGCCTTTTATCTCCTACACAGTTTTAGATGGAACTATTGTAG
TGAGCAATATTATATTTTTTATCATTTGTCCAGAGTATACATTTTCGACA
GTTTCATTCCCTGATATTTATATATAGGAAGAATACCAAGTCCTTCCCCT
GCATATCTGACCCATAAAATTAAAGTCAATCTTTAATACTGGCTTAAGAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAGAAGGTGGACTCCAGAAAATCAAATAACCA
CATTAATATATGGGGCTCAGAGCTAAACAAAGAATTCTCACCTGAGGAAT
AACCAATAGCTGAGAAGTACCTGAATACATGTTCAGCATTCTTAATCATC
AGGGAAATGCAAATCAAAGCAACCCAGACATTCCACTTCACACCAGTCAG
AATGGCTAAGATAAAAACTCAGGTGATAGCAGATGCTAGCGAGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAAC
CACTCTGGAAAGCAGTCTGGTGGTTCCTCAGAAATTTGGACATAGTACTA
CTGGAGGATCCAGCAATACCTCTCCTGGGCATATATCTGTGGAGAGCCAT
GCCTTGAGCAATCGCCATTATAAGATGGCGCTGGCCTCCGCTGTGCCTAA
CTAGTAAACAAGCCTTGTATGCAGGTGCGAGAGTGATCTCACGCCTAGTC
ACTGCCCACCTCAGGGCATAGTAATGGGGTGATGGGTGAGCAACGAATCA
GGAGCTGTCACACCACATCAGGTGCTGAAATGTCAAGCTGCGGGCTATAT
AAGCAGCACCATTTTTTTGGTTTCAGGGTCTTCCTCCTGAGAAGTAAGCA
ATAAAGCTTTTTGCAGCAGAAGATTCTAGTTGTCCTGAGTGCGTTCTTGC
CGGCGTGGACAAAAGCTCAGGATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no349_m19.b1 MSMg01no349_m19.b1 CHROMAT_FILE:
MSMg01no349_m19.b1 PHD_FILE: MSMg01no349_m19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:31 2005
         (539 letters)



>mm_chr14_110057825_110058762
          Length = 938

 Score = 1019 bits (527), Expect = 0.0
 Identities = 533/535 (99%), Gaps = 1/535 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatggctgaaaagcacttaaagaaatgttcaaaatctttagtgatcagggaaatgcaaat 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aatggctgaaaagcacttaaagaaatgttcaaaatctttaatgatcagggaaatgcaaat 260

                                                                       
Query: 61  caaaacaaccctgagattctacctcacaccaattaggatggctaagattagaaatttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaaacaaccctgagattctacctcacaccaattaggatggctaagattagaaatttatt 320

                                                                       
Query: 121 tttcttatgacttggtcttactatattgttatctataagtggtcaatcatggcagagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcttatgacttggtcttactatattgttatctataagtggtcaatcatggcagagctg 380

                                                                       
Query: 181 atgctagtatcaaatttagtaacctcttaaatttatttagctattaaaaatatatagtaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgctagtatcaaatttagtaacctcttaaatttatttagctattaaaaatatatagtaa 440

                                                                       
Query: 241 tgtattagaatattttggtgcacataagtaaaacacatttttaaattacaatactttcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtattagaatattttggtgcacataagtaaaacacatttttaaattacaatactttcct 500

                                                                       
Query: 301 gtgtgttgtactctttctgaaatatgtatttttcaaatatgtagcacggtactttaactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtgtgttgtactctttctgaaatatgtatttttcaaatatgtagcacggtactttaactt 560

                                                                       
Query: 361 cccctttcagaatcagaaatgtaacaattttaatggtggagaagtagccccatggttaaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccctttcagaatcagaaatgtaacaattttaatggtggagaagtagccccatggttaaa 620

                                                                       
Query: 421 gcatcagtttggcatttgtgagactccaggttcaaatgtaattattgaatatttagcacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatcagtttggcatttgtgagactccaggttcaaatgtaattattgaatatttagcacc 680

                                                                  
Query: 481 tattgacattagtgtaaatgccttttatctcctacacagttttagatggaactat 535
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 681 tattgacattagtgtaaatgccttttatctcctacacagttt-agatggaactat 734


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space:   490912
Effective search space used:   490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)