Query= MSMg01no349_n13.b1 MSMg01no349_n13.b1 CHROMAT_FILE:
MSMg01no349_n13.b1 PHD_FILE: MSMg01no349_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:35 2005
(266 letters)
>mm_chr14_56207000_56207665
Length = 666
Score = 499 bits (258), Expect = e-146
Identities = 264/266 (99%)
Strand = Plus / Minus
Query: 1 gactcacttttgattcccagcacccacatcgacgctcacggctttctgtgacctcagtcc 60
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 612 gactcacttttgattcccagcacccacatagacgctcacagctttctgtgacctcagtcc 553
Query: 61 ccagggaatccaacacccttttctggcccatgtgggcaccaggcatgcacatgggacata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ccagggaatccaacacccttttctggcccatgtgggcaccaggcatgcacatgggacata 493
Query: 121 ggcatgcatatagctaaatacccataaaggggaattataaaaaacatacacgtataaaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ggcatgcatatagctaaatacccataaaggggaattataaaaaacatacacgtataaaaa 433
Query: 181 aataataacaagaaattttaagaaaagaagtagtatattaggcctcagtgattttgttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aataataacaagaaattttaagaaaagaagtagtatattaggcctcagtgattttgttga 373
Query: 241 gtgagtcctccttttaacataggtaa 266
||||||||||||||||||||||||||
Sbjct: 372 gtgagtcctccttttaacataggtaa 347
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no349_n13.g1 MSMg01no349_n13.g1 CHROMAT_FILE:
MSMg01no349_n13.g1 PHD_FILE: MSMg01no349_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:35 2005
(539 letters)
>mm_chr14_56017750_56018688
Length = 939
Score = 990 bits (512), Expect = 0.0
Identities = 533/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Plus
Query: 1 accctattctgggggtgctggggtacatttgtgtaggtcacattgcttagaacaagagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 accctattctgggggtgctggggtacatttgtgtaggtcacattgcttagaacaagagtt 260
Query: 61 caagaaactacacaaaaatttacagaaatgtctaagtgattattattattattaactaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagaaactacacaaaaatttacagaaatgtctaagtgattattattattattaactaaa 320
Query: 121 aaccaatcagctgggtacacctgtgagggatttttctttaattaaatcatttgaagtggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaccaatcagctgggtacacctgtgagggatttttctttaattaaatcatttgaagtggg 380
Query: 181 aagatccacttttaatctgggccatgccttctggtggaagcctatatcgcagccatgaaa 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 aagatccacttttaatctgggccatgccttctggtggaagcctatatggcagccatgaaa 440
Query: 241 gaaagaaattctctttccttgcctgcttgtcctaactttgcctggcaagtccattccttc 300
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaagaagttctccctccttgcctgcttgtcctaactttgcctggcaagtccattccttc 500
Query: 301 gctgtctttagagcctgcttcttcaggattccagcctagaggatttggtaccagaagtgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gctgtctttagagcctgcttcttcaggattccagcctagaggatttggtaccagaagtgg 560
Query: 361 ttctagagcagccgaagtataaggaaaaaatttttta-agtatctggaataggctttcca 419
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct: 561 ttctagagcagccgaagtataaggaaaaatttttttttagtatctggaataggctttcca 620
Query: 420 attcgctgacacctacagttactgaaaccttccctagaagcccagagagtactaaaagcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 attcgctgacacctacagttactgaaaccttccctagaagcccagagagtactaaaagcc 680
Query: 480 caaagtgttatccgttttacaaacttaaggagacaaatgcatttgattttcctgattcat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 caaagtgttatccgttttacaaacttaaggagacaaatgcatttgattttcctgattcat 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
