Query= MSMg01no349_p19.b1 MSMg01no349_p19.b1 CHROMAT_FILE:
MSMg01no349_p19.b1 PHD_FILE: MSMg01no349_p19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:46 2005
(501 letters)
>mm_chr14_9893838_9894738
Length = 901
Score = 899 bits (465), Expect = 0.0
Identities = 489/497 (98%)
Strand = Plus / Plus
Query: 5 gaattctttgtaaacttacatcattaaagcatatgcaaaatgatatgagttgattctgga 64
|||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtagacttaaatcattaaaacatatgcaaaatgatatgagttgattctgga 264
Query: 65 gtaagctaggactttgggttataggttgaatatgtgtaaatgccattgataatcctggct 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataagctaggactttgggttataggttgaatatgtgtaaatgccattgataatcctggct 324
Query: 125 tacacccagagatccattttcctttttcttgagcctgctcttcacctggtgacttcttag 184
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 325 tacacccagagatccattttcctttttcttgagcctgcccttcacctggtgacttcttag 384
Query: 185 agtgactagggtgagatgcttctggtgatacagggctttgcattattattaagaggagaa 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgattagggtgagatgcttctggtgatacagggctttgcattattattaagaggagaa 444
Query: 245 acttatatctaccaatagctattgtatgctgtgtccaaacagcagtcccatttaaaatcc 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 445 acttatatctaccaatagctattgtatgctgtgtccaaacagcagtcccatttaaaatac 504
Query: 305 aatgtgaatgatttgtttcatattcatggtttgctttattctggttctgaatatcaaacg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aatgtgaatgatttgtttcatattcatggtttgctttattctggttctgaatatcaaacg 564
Query: 365 atcagtgtcattatcctcaaagtaaataacgaatgtctaatctgttcctctttttcatag 424
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atcaatgtcattatcctcaaagtaaataacgaatgtctaatctgttcctctttttcatag 624
Query: 425 aagagtcatttattttcaatttttttctccacattgctcagaggttgtcatcattaactt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aagagtcatttattttcaatttttttctccacattgctcagaggttgtcatcattaactt 684
Query: 485 ctgccatttccagaaca 501
|||||||||||||||||
Sbjct: 685 ctgccatttccagaaca 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no349_p19.g1 MSMg01no349_p19.g1 CHROMAT_FILE:
MSMg01no349_p19.g1 PHD_FILE: MSMg01no349_p19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:41:46 2005
(556 letters)
>mm_chr14_10116256_10117212
Length = 957
Score = 1062 bits (549), Expect = 0.0
Identities = 555/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 1 caccctagaaattcattttaagagaaaacttttacaggtgag-aaaaaaaatgaaaatat 59
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 757 caccctagaaattcattttaagagaaaacttttacaggtgagaaaaaaaaatgaaaatat 698
Query: 60 aatcctaataaaataaaagacaaaagctagttggaaaacaaaaacactccagacaaataa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 aatcctaataaaataaaagacaaaagctagttggaaaacaaaaacactccagacaaataa 638
Query: 120 caacagggtgtggttatatagaatatagcatatcagtaaaagagaataatgtataatatt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 caacagggtgtggttatatagaatatagcatatcagtaaaagagaataatgtataatatt 578
Query: 180 acaaattcctactataaaagaacacaggcataagcaaacgttctaaatatactgttgagt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 acaaattcctactataaaagaacacaggcataagcaaacgttctaaatatactgttgagt 518
Query: 240 gaaaagtaattacagcacaatgtgaacaatagagtccttgattcagaaacaagataaaat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaaaagtaattacagcacaatgtgaacaatagagtccttgattcagaaacaagataaaat 458
Query: 300 aatcaaatatgcaatgtttgctacagaaaaataaaaggaaaatactgtttttcttcctgt 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 aatcaaatatgcagtgtttgctacagaaaaataaaaggaaaatactgtttttcttcctgt 398
Query: 360 gttttcctatactttctcggctttctctaagagaactcaaaataatttcataactagtaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 gttttcctatactttctcggctttctctaagagaactcaaaataatttcataactagtaa 338
Query: 420 gtgtgctcagtattccttgtaaaagataagacagaaatatggtagaatatatgacgctct 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtgtgctcagtattccttgtaaaagataagacagaaatatggtagaatatatgacgctct 278
Query: 480 cccatggacttagggcagcagtaggcagaagtggcgagaggattaagaaggctggagcca 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cccatggacttagggcagcagtaggcagaagtggcgagaggattaagaaggctggagcca 218
Query: 540 cattgaatgcatagcca 556
|||||||||||||||||
Sbjct: 217 cattgaatgcatagcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
