BAC Information

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BAC

Clone NameMSMg01-350O11
Chromosome14 (Build37)
Map Location 20,850,278 - 20,850,561
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
Downstream gene1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g, Plau, EG620119, Vcl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-350O11.T7 (MSMg01no350_o11.b1)MSMg01-350O11.TJ (MSMg01no350_o11.g1)
ACCAG462403AG462404
length795779
length of high quality
(start - end)
36 (93 - 128)282 (125 - 406)
definitionCHROMAT_FILE: MSMg01no350_o11.b1 PHD_FILE: MSMg01no350_o11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:00 2005CHROMAT_FILE: MSMg01no350_o11.g1 PHD_FILE: MSMg01no350_o11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 22:43:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCGTCTATATTTTGCGGACGCTAAAAAGAAGCACAATTTCCTGACCCG
CACGCGGAATTCATGTGTTTCCCAGCAGCGGGGGNANATGNATATATGTA
TATTGTGGAGATTGAAAGAGAATGATTGACGCCCTAGAACTGAAGTTGCA
AGCATCACCCAAGTTGGGTCTGGGAACTGAACTCAAGTCCTCTGGAAGAG
CAGCAGGAGCTCTTAACTTCTGAGCCATCTCTCTGGTCCAGTGTAAAGAC
ACCACACTATTTGTGGACTGGCCTCCTTTTATGCGATAGAGAAACTATGG
ATACCTTGCCTATAGCACTGCGACTATTTTTTTTTCACCCGCTGGACACC
AAATTTGTATTTGATTATATGCTCCACCCTTCGCCTTGCAATTCTATATC
TTGTAATATCTATCTTGCTCTGTGACCCCCCCTATTTTATGTCATCCTCT
TGCCGCTCTCATTTTATATTATCTTTTCCTTTTTTCTCCCCCTCCAATCA
CTTTATATCCTACATTTTTCCTCTTCATAGTACACAACAATATATCGCCT
TCTTACTTCTTCCATCTCCATTTCTCCCTCCTCCTCTATTCCACCTTCTA
TTCTCTCTTCTAGAATATCCCCCCCTTCCTCTTTCTATCTCTCAATATCT
CCAGTTTTCCCCATCCCTCATCCACAGTCCATCCTTTTTTATCTTCTTTA
CCTCCCCCTTATTTCCCTCTCTTCTCCTCTTCATTCCCCTTTATTTCCTT
TTCTCTTTTTCCTTTCCCTTTTTTCTCCTATCTCTTATCCTTGCC
TCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTTTGGGAGAATATCTTCA
GCTGATGAAAATAAAATGCACATGTCTTATGGGTGTTCTCAGGCCCAGAT
GCAAGGATTGATTAGCAATGTCTGGATAGGACATCAGTACTCCCATTTCT
AAGGGGTCTATAATACAGAAAAACAAGAGTAATAAAGAACAGGTGGGTGA
GATACAGGTGAGGTAGTATTTTAATTTGTATCACTTCATACTTAAACGAA
CCTTAACCCTGACCCCATATTAAGCAGTGACTTCCATCTCCACACAATGC
TAAAGACTGCAGGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCCCTCTGTTTCTCCCTCCTTTCCTTCTCA
TGCTTTTAAAAGTTACTCTATTACTACTTACCCACTCTCCATATGTTGCC
CTGCCTTTTGATTTTCTATCACCCCTCCCTTCCCCCCTCTTTTTCTTTTC
GTCTACAGTTCTCCCATCTATATTTTTTTCCTTGTCTTTCTTCATTTCTA
CTCTTTTCCCTTTTTTTTTTCCTTTCCCCCACTATTCCTTCTTACCCCTT
CCTGTTTTTCCACCCCTATCCCCCTTTCCTTCCATCCTTCCCTCACTACT
TTCATCCTTCCTCCTCCTCCTTCCTTTTTTTTTCCACTTCCCTATTTTTT
CTCCGCCTCTCTTTATCCCTCCTTTCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no350_o11.g1 MSMg01no350_o11.g1 CHROMAT_FILE:
MSMg01no350_o11.g1 PHD_FILE: MSMg01no350_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 22:43:00 2005
         (282 letters)



>mm_chr14_20850123_20850804
          Length = 682

 Score =  514 bits (266), Expect = e-150
 Identities = 279/284 (98%), Gaps = 2/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttatgggtgttctcaggcccagatgcaaggattgattagcaatgtctggataggacat 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 439 tcttatgggtgttctcaggcccagatgcaaggattgattagcaatgcctggataggacat 380

                                                                       
Query: 61  cagtactcccatttctaaggggtctataatacagaaaaacaagagtaataaagaacaggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtactcccatttctaaggggtctataatacagaaaaacaagagtaataaagaacaggt 320

                                                                       
Query: 121 gggtgagatacaggtgaggtagtattttaatttgtatcacttcatacttaaacgaacctt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 319 gggtgaggtacaggtgaggtagtattttaatttgtatcacttcatacctaaacgaacctt 260

                                                                       
Query: 181 aaccctgaccccatattaagcagtgacttccatctccacacaatgctaaagactgcaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 aaccctgaccccatattaagcagtgacttccatctccacacaatgctaaagactgcaggc 200

                                                       
Query: 241 tctctctctctctctc--tctctctctctctctctctctctctc 282
           ||||||||||||||||  ||||||||||||||||||||||||||
Sbjct: 199 tctctctctctctctccttctctctctctctctctctctctctc 156


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 65
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)